Pairwise Alignments

Query, 287 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., transcriptional regulator, AraC family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 79  CVVTSGSDHAFGGVVGQSDILVLNMPVPSDDDPLLLRKLNE--------LAVGDVYFQLD 130
           C   +  +     +V   D+ VLN  +   +D +  R L +        LA  D  F+  
Sbjct: 80  CEAVATPEKPLLSLVVDIDLGVLNQLIGQIEDRIDYRSLTQGCTHQGLFLAKADAAFR-- 137

Query: 131 GQIQRLIQMLVQEMQASP------DDLLLGRACNDTVVALLQRHISALASVHKE-SRFDM 183
             +QRL+  L   ++A         +LL    C +   AL      ALA+ +   SR + 
Sbjct: 138 NTVQRLLLALSCPLEAQVLGPGLVRELLFRVLCGENAAAL-----HALATKNTNMSRIEK 192

Query: 184 EVVDRYIEQHLAHRISVAQLAGSVFLSESQFHVLFKEQMGLTPHQYVLNKRVDMAKKLIE 243
            +  + I  + +   +V QLAG V +S S FH  FK+    +P QY+   R++ A+ L+ 
Sbjct: 193 AL--KQIHGNFSEPFNVDQLAGFVNMSPSTFHRAFKDVTAFSPIQYLKRVRLNKARSLLR 250

Query: 244 QGRLNLGQVAELTGFSNQSTFTHTFSRLHGISPS 277
           +  +   + A + G+ + S F+  F R  GISPS
Sbjct: 251 EDGVRASEAARMVGYESVSQFSREFRRYFGISPS 284



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 60/242 (24%), Positives = 89/242 (36%), Gaps = 59/242 (24%)

Query: 75  PGQGCVVTSGSDHA--------------------FGGVVGQSD---ILVLNMPVPSDDDP 111
           PG G   TSGS H                     FGG V Q D    L L++P+ ++ + 
Sbjct: 23  PGVGLYRTSGSIHRTPLLYQQGLIILGQGAKLVHFGGRVYQYDQDHYLALSVPIAAECEA 82

Query: 112 L------LLRKLNELAVGDVYFQLDGQIQRLIQMLVQEMQASPDDLLLGRACNDTVVALL 165
           +      LL  + ++ +G V  QL GQI+  I         +   L L +A +      +
Sbjct: 83  VATPEKPLLSLVVDIDLG-VLNQLIGQIEDRIDYRSLTQGCTHQGLFLAKA-DAAFRNTV 140

Query: 166 QRHISALASVHKESRFDMEVVDRYIEQHLAHRISVAQLAGSVFLSESQFHVLFKEQMGLT 225
           QR + AL+   +                       AQ+ G   + E  F VL  E     
Sbjct: 141 QRLLLALSCPLE-----------------------AQVLGPGLVRELLFRVLCGENAAAL 177

Query: 226 PHQYVLNKRVDMAKKLIEQGRLNLGQ---VAELTGFSNQS--TFTHTFSRLHGISPSQYK 280
                 N  +   +K ++Q   N  +   V +L GF N S  TF   F  +   SP QY 
Sbjct: 178 HALATKNTNMSRIEKALKQIHGNFSEPFNVDQLAGFVNMSPSTFHRAFKDVTAFSPIQYL 237

Query: 281 RR 282
           +R
Sbjct: 238 KR 239