Pairwise Alignments

Query, 496 a.a., sodium/proline symporter PutP from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., L-arabinose/L-arabinobiose symporter (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  113 bits (282), Expect = 2e-29
 Identities = 120/467 (25%), Positives = 210/467 (44%), Gaps = 63/467 (13%)

Query: 13  VYLILMLAIGVYAYQRTKN-SADYFLGGRSLGPWPAALSAGASDMSGWLLLGLPGYAYAA 71
           V+ + ++ I V+  ++ +N SADYFLGGR         S  AS++    L+GL G   ++
Sbjct: 11  VFFLALIGIIVWVVRQKQNDSADYFLGGRDATWLAIGASIFASNIGSEHLIGLAGAGASS 70

Query: 72  GIE-SFWLAGG--LLVGTWANWLVNAKRLRTYSITTDSLTLPEFLSRRFNDNSKLIQTIS 128
           G+  + W   G  +L+  W  ++    R   Y       T+PEFL RR+N  S+ I  +S
Sbjct: 71  GMAMAHWEIQGWMILILGWV-FVPFYSRSMVY-------TMPEFLERRYNPQSRTI--LS 120

Query: 129 AFFILLFFLFYTSSGLVAGGKLFETVF------GLDYSTAVIIGTVCVVS-YTLFGGFLA 181
              ++ + L   +  + AGG +F+ VF      G+D+     IG V + + YT+FGG  +
Sbjct: 121 VISLVSYVLTKVAVTVYAGGLVFQQVFGIKELWGIDFFWIAAIGLVVLTALYTIFGGMKS 180

Query: 182 VSWTDLVQGLLMAAALMIVPIAAMN--GGFTQLNHDLAAIN--------PELLTLWNDAK 231
           V +T ++Q  ++    +I+ +      GG+ ++     A+           L+   +DA 
Sbjct: 181 VLYTSVLQTPILLLGSLIILVLGFKELGGWDEMMRVCGAVTVNDYGDTMTNLIRSNDDAN 240

Query: 232 GEPLSAI---AIISLVAWGLGYFGQPHILARFKASRSNKDLITARRIAVVWTGLSMAGAI 288
              L A+   AII    W    F    I+ R  + ++ K+   ARR  +    L +    
Sbjct: 241 FPWLGALIGSAIIGFWYWCTDQF----IVQRVLSGKNEKE---ARRGTIFGAYLKLLPVF 293

Query: 289 LVGLTGLI-------FVTQSG-------TIGLDDGEKIFMLLVNSLFHPVIAGILLAAIL 334
           L  + G+I       ++   G         G  + +  F  LV  L    + G+++  IL
Sbjct: 294 LFLIPGMIAFALHQKYIGAGGEGFLPMLANGTANADAAFPTLVAKLLPAGVKGLVVCGIL 353

Query: 335 AAIMSTADSQLLVSSSALAEDFYKQVFKTDASSEDIVRVGRIAVILISLIALFLAMTPDS 394
           AA+MS+  S    S+     DFYK+ F+ +   + +V +G+IA ++I  + L +   P  
Sbjct: 354 AALMSSLASLFNSSAMLFTIDFYKR-FRPETPEKKLVGIGQIATVVI--VILGILWIPIM 410

Query: 395 SVLGLVSYAW-----AGFGAAFGPALVLSLYWPRMNRHGALSGIIVG 436
             +G V Y +     +        A +L + W R +  G + G+I G
Sbjct: 411 RSVGDVLYTYLQDVQSVLAPGIAAAFLLGICWKRTSAQGGMWGLIAG 457