Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  318 bits (814), Expect = 6e-91
 Identities = 211/639 (33%), Positives = 328/639 (51%), Gaps = 20/639 (3%)

Query: 11  MRLSLKRKMVFSVVVAIAVTAAALVAAGYQTF-EKDSWRAIESESRN-TLQAHAKGIGDW 68
           MR SLK      +  ++ V AA  +   Y  + ++++      E+ N T ++ A  I +W
Sbjct: 1   MRKSLKFSHKILLAASLVVIAAFTLFTFYNDYLQRNALHVQLKENLNQTSESTAGNIRNW 60

Query: 69  FLGKQLALKGLREEIE--RNPQLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQDPSLNTA 126
             G+ L ++ L E     ++PQ E    L Q     +F   Y G   G    Q P   +A
Sbjct: 61  LSGRILLVENLAENASSPQSPQ-EQNRVLGQPTLIATFMSIYQGRSDGSFVTQPPDDMSA 119

Query: 127 DYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKL 186
           DYDPR R WY +A  AGK I TEPY+    + LVVTLA P++    + GV   +L+L+ L
Sbjct: 120 DYDPRTRPWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGDSGVSGVIGGDLSLEIL 179

Query: 187 IKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLT------ISKLNIAAK 240
           +K + ++ + G GYA LV+  G+I+ HP   L++K   E+    T      +S+   A K
Sbjct: 180 VKMISSLRMHGDGYAFLVDANGRILVHPDTSLVMKTLAEVYPANTPRLSQDLSESEYAGK 239

Query: 241 DHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMA 300
              L    +DG   V         +W + + MDK +    L +     I   +  ++++ 
Sbjct: 240 TQILTFAHVDGLPSV---------NWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLII 290

Query: 301 LLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQM 360
           LL    ++  L  L  +  A+ DIA G+GDLT+RL + SQDE G L + FN FV+R+H  
Sbjct: 291 LLLGMLLSVLLRPLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLFVERIHDS 350

Query: 361 VKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENT 420
           ++ V   +V L + A     ++  +      Q      VA A+ E+ +AT EIA NA   
Sbjct: 351 MREVASSTVQLNEVALRVLNASNSSMLNSDQQSHRTNSVAAAINELGAATQEIAQNAARA 410

Query: 421 AKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIA 480
           + +++ +  L  DG   + Q+ +++ +L++ ++ A   I  L      I  IL  I GI+
Sbjct: 411 SGHSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGIS 470

Query: 481 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAV 540
           +QTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  S  ++Q  I  LQ     AV
Sbjct: 471 QQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAV 530

Query: 541 SVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTE 600
           S+M +S +    +V   N+  ASL+ ++E I +I  M   +A+A EEQ+ V   INV+  
Sbjct: 531 SIMNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAINVDIT 590

Query: 601 SVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            +  ++ Q  E    +++    L   +  L + +  F++
Sbjct: 591 EINTLNQQGVENLNATLRACTDLEQQSTRLTQLVGSFRI 629