Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  336 bits (861), Expect = 2e-96
 Identities = 203/637 (31%), Positives = 336/637 (52%), Gaps = 21/637 (3%)

Query: 13  LSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFLGK 72
           L   +K++ +  + + V  +  +        +    +++SE +       + I  W   +
Sbjct: 4   LGFSKKILLAAALIVVVAFSVFIVVNDYRQRQSLKSSVKSELQQLGTLTTQNIQTWLESR 63

Query: 73  QLALKGLREEIERN----PQLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQDPSLNTADY 128
              L+ + ++I  +    PQL+    L     S SF LSY+G+ +G MF    +   ADY
Sbjct: 64  MQLLQSMSQQIAADGKELPQLQRAIGL--PAYSESFQLSYFGSTEGVMFSVPSANRPADY 121

Query: 129 DPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIK 188
           DPR RGWYK A+ A   I TEPY++ +   LV+T+A PV++Q Q +GVA +++ALD + K
Sbjct: 122 DPRARGWYKAAQNAPGTIVTEPYIAASSGKLVMTMATPVKFQNQFVGVAGADIALDNVTK 181

Query: 189 DVLAIEVPGKGYAILVNQKGKIVAHPTQDLILK------PTEEMSAQLTISKLNIAAKDH 242
            + ++   G GYA LV+  GKI+ HP   L+LK      PT        +++++      
Sbjct: 182 IINSLNFDGHGYAFLVSADGKILVHPDSKLVLKNISEAYPTNTPKITTGVTEIDSGKNPE 241

Query: 243 SLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALL 302
            +    + G         V+  +W + +V+++      L +     I   + +++V+ LL
Sbjct: 242 IISFTPVQG---------VSTANWYVALVLEQDSAYAMLAEFRASAITAMVVVVVVIILL 292

Query: 303 TSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVK 362
               +   +  L  +  A+ DIA+G+GDLT+RL + SQDE G LA+ FN+FV+R+H  ++
Sbjct: 293 LGLLIRVLMQPLHQMGRAMRDIADGEGDLTKRLAITSQDEFGELAESFNRFVERIHTSIR 352

Query: 363 NVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAK 422
            V   +  L + A      +  +      Q +    VA A+ E+ +A  EIA NA  T++
Sbjct: 353 EVASTAAQLGEVATRVVKVSNASMGNSDQQANRTESVAAAINELGAAAQEIAQNAARTSQ 412

Query: 423 NATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQ 482
            ++ +  L  DG   +QQ+ +++++L+ +++ +   I  L      I  IL  I  I++Q
Sbjct: 413 QSSDASGLASDGQNVVQQTIKAMNELSGKISESCVNIESLNGKTANIGQILEVITSISQQ 472

Query: 483 TNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSV 542
           TNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  S +++QT I  LQ     AV+ 
Sbjct: 473 TNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQTMIEELQVGARDAVTN 532

Query: 543 MTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESV 602
           MTES +  E SV   N  G  L +++  I++I+ M   +A+A EEQ+ V   INV+   +
Sbjct: 533 MTESQRQSEDSVGIANLAGERLGSVTRRIEEINGMNQSVAAATEEQTSVVESINVDITHI 592

Query: 603 REVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
             ++    +  +Q+++   SL   A  L + +  F++
Sbjct: 593 NTLNQLGVDNLRQTLEACNSLEEQAARLQQLVGSFRI 629