Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  317 bits (813), Expect = 8e-91
 Identities = 199/634 (31%), Positives = 333/634 (52%), Gaps = 13/634 (2%)

Query: 11  MRLSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFL 70
           M L  + K++ +    + +  A           K   + +ES      Q  A  + +W  
Sbjct: 1   MNLKFRHKILLAAAGVVVLAFALFTLYNDYLQRKTINQNLESSVGQAGQLTASSVQNWLS 60

Query: 71  GKQLALKGLREEIE-RNPQLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQDPSLNT-ADY 128
           G+ L L+ L + +  +    +L   + Q+    +F  +Y G+ +G  F Q P+++  A Y
Sbjct: 61  GRILVLENLTQNVAFQGVNSDLSGLVSQSALVSTFQFTYVGDSKGT-FTQRPNVDMPAGY 119

Query: 129 DPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIK 188
           DPR R WYK    AGK I + PY++ ++  LVVT+A PV+  GQ+ GV   +L+LD L+K
Sbjct: 120 DPRQRPWYKSTVDAGKTILSAPYLA-SVGGLVVTIASPVKAAGQVTGVVGGDLSLDTLVK 178

Query: 189 DVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQLS 248
            + ++E  G GYA LV+  G+I+  P ++ ++K  +++    TIS       D  L +++
Sbjct: 179 IINSVEFGGLGYAFLVSGDGQIIVSPDKEQVMKNLKDIYPGQTISL------DARLREVT 232

Query: 249 MDGRDKVLMAEEVA---NTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSW 305
           ++G+ ++L    +    + DW + + +DK     PL+      +   L  + V+ALL S 
Sbjct: 233 LNGQQRLLSFTPITGLPSADWYIGLSIDKDKAYAPLSQFRSSAMVAVLIAVAVIALLLSL 292

Query: 306 FVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVR 365
            +   +  L ++  A+ DIA+G+GDLTRRL ++ +DE   L   FN+FV+R+H  +  V 
Sbjct: 293 LIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFVERVHASIVEVS 352

Query: 366 EVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNAT 425
             ++ +   +     S+  +      Q      VA A+ E+ +AT EIA NA + +  A+
Sbjct: 353 SATLQVHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIARNASDASIQAS 412

Query: 426 QSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNL 485
           ++    EDG   ++++  ++  L+ +++ +   I +L      I  IL  I+GI++QTNL
Sbjct: 413 EARNQAEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIGHILDVIKGISQQTNL 472

Query: 486 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTE 545
           LALNAAIEAARAGE GRGFAVVADEVR L+ RT  S +EI   I  LQ  +  AV  M E
Sbjct: 473 LALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIGSLQSGSQHAVLNMNE 532

Query: 546 SHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREV 605
           S    + SV   NQ G+ L+ ++  I  I  M   +A+A EEQ+ V   +N++   +  +
Sbjct: 533 SQTSSQESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEEQTAVVETLNIDINQINTL 592

Query: 606 SDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           + Q      ++++   +L   A  L + +  FK+
Sbjct: 593 NQQGVANLNETLKDCAALSQQAGRLKQLVDSFKI 626