Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (570), Expect = 1e-62
 Identities = 139/394 (35%), Positives = 227/394 (57%), Gaps = 10/394 (2%)

Query: 246 QLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSW 305
           +++  G+D V ++E++     L +   D+   +     +    + I LGI  + A++ + 
Sbjct: 257 EMTTQGQDIVKISEDMYK---LQLDRRDQESAQARTTQITCTLLAIILGI--IAAVIITR 311

Query: 306 FVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVR 365
            + R L E   + + +A      GDLT+ L V   DE+G+L     +    L +++  +R
Sbjct: 312 QITRPLRETLAVVDRIAS-----GDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIR 366

Query: 366 EVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNAT 425
           +  V +   A+  +A   Q S  + +Q+ E   VATA+ EM++  AE+A NAE  ++ A+
Sbjct: 367 DSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQASQAAS 426

Query: 426 QSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNL 485
            + +   DG   + ++   I++LA E+  +V  ++ELE  +++I  ++  I+ +AEQTNL
Sbjct: 427 NADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDVIKAVAEQTNL 486

Query: 486 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTE 545
           LALNAAIEAARAGE GRGFAVVADEVR L+QRT  ST EI+T +A LQ  T    S+M  
Sbjct: 487 LALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSGTRQVSSIMLN 546

Query: 546 SHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREV 605
           S +L  +SV    Q G SL +I++ +  I  M  QIA+AAEEQS V  +I+ +  +VR+V
Sbjct: 547 SRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDV 606

Query: 606 SDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           S+Q A  ++++   +  L  +  +L   +SRF++
Sbjct: 607 SEQTASASEETAASSVELARLGGQLQTMVSRFRI 640



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 78/395 (19%), Positives = 149/395 (37%), Gaps = 66/395 (16%)

Query: 282 NDMLMVQIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTR----RL-- 335
           N  + +++ +G G++LV   + +      ++ L N +N ++DI   +  LT+    RL  
Sbjct: 7   NISVNMKLALGFGLVLVFTAILALTGWTSMSGLINRSNWMSDITSLNAQLTKLRVTRLQY 66

Query: 336 -----DVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVALTQG---ADHAAASATQAS- 386
                D +  + V    D F  + ++L    K+   + +    G   AD+  +     S 
Sbjct: 67  MVADGDEKVAETVQTSLDSFKAYQEKLRASFKSPENLKMLDQLGIVIADYQKSLNNMRSG 126

Query: 387 -KRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSI 445
            K     +DE+T  A     +         N +    N  +  +L  D    ++ ++  +
Sbjct: 127 YKASTAARDELTTHAVKSLAVFEQLVTEVRNMDPADANRFEQYRLVTDAKDDLRLARYEV 186

Query: 446 DQLAQELTGAVR--IISELEVHANEISTILSTIRGIAE------QTNLLALNAAIEAARA 497
                  T       +S+L+    ++  + +T  G         +T+L+A    ++  +A
Sbjct: 187 RGYTTNATPETEQAAVSKLDSAIKDLDALKTTFSGTQADQLRQLETSLMAYRTTLQNFKA 246

Query: 498 G------------EQGRGFAVVADEVRVL------SQRTHASTEEIQTKIAGL------- 532
                         QG+    +++++  L       +   A T +I   +  +       
Sbjct: 247 ATGTIVQARKEMTTQGQDIVKISEDMYKLQLDRRDQESAQARTTQITCTLLAIILGIIAA 306

Query: 533 ----QKVT-----TTAVSVMTESHKLVET-SVADVNQTGASLQAIS-------EAIQQIS 575
               +++T     T AV     S  L +T +V   ++ G   Q I        E I  I 
Sbjct: 307 VIITRQITRPLRETLAVVDRIASGDLTQTLAVTRSDELGVLQQGIQRMGTTLRELIGGIR 366

Query: 576 DMATQIASAAEEQSLVTADINVNTESVREVSDQLA 610
           D   QIASAAEE S VT   +    S +  +DQ+A
Sbjct: 367 DSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVA 401