Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  252 bits (643), Expect = 4e-71
 Identities = 172/527 (32%), Positives = 274/527 (51%), Gaps = 15/527 (2%)

Query: 127 DYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVR-YQGQLIGVAASNLALDK 185
           +Y    R W++EA   G     +P V     ++  T+  PV    GQL+G+   ++ +D 
Sbjct: 140 NYYTNKRPWWQEALDKGGLFVGDPAVDANDGSISATVKTPVYGANGQLLGIGGMDILIDT 199

Query: 186 LIKDVLA-IEVPGKGYAILVNQKGKIVAHPTQDLILKP-----------TEEMSAQLTIS 233
           + K +LA I+  G G A L+   GK+V  P  +    P           +E  +A   + 
Sbjct: 200 IGKSLLAPIKYQGSGQAFLMTGDGKLVYFPGFNESFPPGSAIQKVDNNGSEGFTALGQLM 259

Query: 234 KLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGL 293
           +   +     ++Q S      V +A +     W L  ++   V+E P+ D       + L
Sbjct: 260 QRQSSGFTDVVYQGSPQRVAFVEVAGDYPKQKWHLAFMLPHEVIEAPVRDAFWNACLMSL 319

Query: 294 GILLVMALLTSWFVARQLN-ELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNK 352
           GI+L++ + T W +   L  +L ++  A+ ++A G+GDL+RR+D++ +DE+GL+AD FN+
Sbjct: 320 GIILLVGV-TVWLLLLPLRRQLESLLGAMDNMASGEGDLSRRIDIQREDELGLMADAFNR 378

Query: 353 FVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAE 412
           F  ++ QM++  R+++  +  G   A      A   +  Q+ +I  VA A  EMA  + E
Sbjct: 379 FAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQIDSVAAAAIEMAHTSQE 438

Query: 413 IASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTI 472
           +A++A+ TA  A  +    +DG   + ++   I+ L+  +  A  +I EL   + +I  +
Sbjct: 439 MAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEAAAVIKELRGSSEKIGEV 498

Query: 473 LSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGL 532
           LS IR IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST  IQ  I  L
Sbjct: 499 LSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQGIIQRL 558

Query: 533 QKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVT 592
           Q+    A SVM       +      +Q   SL  I++AI  I    T+I  A  +Q++V 
Sbjct: 559 QQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGKITDAIGAILQQTTEITVAIGQQAVVA 618

Query: 593 ADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            ++  N E+VR +SD     +Q+     K+   +   L+  IS+F++
Sbjct: 619 DEVAQNVENVRGLSDDSHSASQELAVSLKAFEQLTHALSGNISQFRV 665