Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  234 bits (598), Expect = 7e-66
 Identities = 177/568 (31%), Positives = 281/568 (49%), Gaps = 38/568 (6%)

Query: 102 GSFGLSYYGNEQGEMFRQDPSLNTADYDPRVRG-------WYKEAKAAGKPITTEPY--- 151
           G+  + Y  ++ G +  Q     +  YD  ++        WY  AK   +P   EPY   
Sbjct: 144 GTLEIYYTRSDDGSVEHQQVDDASEKYDATLKEFGVREAEWYLCAKDTKQPCLMEPYLYE 203

Query: 152 VSVTMQTLVVTLAEPVRYQGQLIGVAASNLAL---DKLIKDVLAIEVPGKGYAILVNQKG 208
           +S     L+ +L  PV   G   GV   ++ L    KLI ++ A    GK    L++QKG
Sbjct: 204 ISPGNTALMTSLTVPVVVGGSFRGVIGVDVNLPVFQKLIDELSASLYQGKAKVTLLSQKG 263

Query: 209 KIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQLSMDGRDKVLMAEEV----ANT 264
            +VA    D   +P  E  A    S+L    +     +      D +++A  +    A  
Sbjct: 264 LVVAASHYDKKARPLGESIAPSLASQLTGLHRQGGYLEQG----DNIIVAYPIEIPLAKA 319

Query: 265 DWLLVMVMDKGVLEQPLN--DMLMVQIGIGLGILLVM--------ALLTSWFVARQL-NE 313
            W LV+ + K    Q  N  D  M  +   LG LL++        A++T   V R +   
Sbjct: 320 QWSLVIEVAKADAYQAANAMDKAMSAMASSLGSLLLIVGVIVSLIAVVTISLVIRSIVAP 379

Query: 314 LGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVALTQ 373
           L  I + + ++A  +GDLT+++ V S  E+  L    N F+++L  ++  ++E++     
Sbjct: 380 LKVIQSRVENLASAEGDLTQQVTVESHAELIALGGGINGFINKLRLLIGELKELASRSQA 439

Query: 374 GADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNA---TQSVQL 430
            +  AA  A Q    +  Q  +I  V TAV EM++   E+A  +E TA      T +V+ 
Sbjct: 440 ESQVAAEIAQQTHNSVNRQYSDIESVVTAVNEMSATALEVAKASEQTASETEAMTLNVKA 499

Query: 431 GEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLALNA 490
           GED    + Q+   +  ++QE   A   + ++   +  IS IL  I  IAEQTNLLALNA
Sbjct: 500 GEDS---LSQAMGYVTHMSQESLLAKEAVGKVAESSTNISKILEVISAIAEQTNLLALNA 556

Query: 491 AIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKLV 550
           AIEAARAGEQGRGFAVVADEVR L+ +T +ST+EI   I  LQ+   +A  ++ +     
Sbjct: 557 AIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLIEALQREVNSASQIIDQGVDGA 616

Query: 551 ETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQLA 610
           + +VA      +SL  I   IQ++S   T IA+AAEEQS VT +++ N   + + + +LA
Sbjct: 617 QRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISDSASELA 676

Query: 611 EEAQQSVQQAKSLHAMAQELNKEISRFK 638
             A ++ Q + SL  + ++ ++++ + K
Sbjct: 677 RLADEAQQSSASLAGLVEQQHQQLGKLK 704