Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  242 bits (618), Expect = 3e-68
 Identities = 142/397 (35%), Positives = 228/397 (57%), Gaps = 11/397 (2%)

Query: 254 KVLMAEEVANTDWLL-----------VMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALL 302
           K+  A  V   DW+L            +   + V+ + +ND  M+ +   L ++ + A++
Sbjct: 158 KIGYAATVPGKDWILGTGAYTDDIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVV 217

Query: 303 TSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVK 362
                 R +N + N+   L DIA+G+GDLT+RLDV+  DE+ +L   FN+FVD+L  ++K
Sbjct: 218 MLVAAQRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIK 277

Query: 363 NVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAK 422
           +V   +V +  GAD+ ++     ++++ +  +E   V TA+TEM++  +E+A +    A+
Sbjct: 278 DVARATVEVKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAE 337

Query: 423 NATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQ 482
               + Q   +    +  S   +  L  E+  A   I+ L   + +I+++LS I GIAEQ
Sbjct: 338 ATQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQ 397

Query: 483 TNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSV 542
           TNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT AST EI   ++ L  + + AVS 
Sbjct: 398 TNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSS 457

Query: 543 MTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESV 602
           M  S +    SV        SL A++ A+  I+DM+TQIA+AA EQS VT +IN N  ++
Sbjct: 458 MESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAI 517

Query: 603 REVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           +E+ ++L + +  +   ++ L    + L+  + +FK+
Sbjct: 518 QEIVNELLQASNSASDTSQGLANEGRNLDTLVGQFKV 554