Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  233 bits (594), Expect = 2e-65
 Identities = 171/649 (26%), Positives = 308/649 (47%), Gaps = 40/649 (6%)

Query: 13  LSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFLGK 72
           +  K+ +V S+V  +A+         Y   ++ +   +  +     +  +  +  WF  K
Sbjct: 1   MGFKKSLVASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVTRNESAKVATWFGAK 60

Query: 73  QLALKGLREEIERNP-QLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQ---DPSLN---- 124
             A+  L         Q   V   R           Y+G + G  +     D  LN    
Sbjct: 61  AQAMDELARHYRLGSYQDNYVNTARLATDLSGVARIYFGFDDGSAYSTETGDKWLNGKAI 120

Query: 125 TADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALD 184
              YDPR R WY++ KA  +   T+ Y+       V+++ + +       GV   ++ L 
Sbjct: 121 PGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISILKNLGD-----GVVLGDIELT 175

Query: 185 KLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSL 244
            L   V AI+ PG   A++ +Q GK++A  +  L+   +      L   +  I   D  +
Sbjct: 176 YLHDVVSAIDYPG-AVALITDQTGKVLASESPTLV-SGSRFSDFGLPQVQQKIIGSDEVM 233

Query: 245 FQLSMDGRDKVLMAEEVA---NTDWLLVMVMDKG----VLEQPLND-------MLMVQIG 290
            +  +DG DK+  ++ +       W L + +DK     V++Q L         ML+  I 
Sbjct: 234 QEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIMLLCAIS 293

Query: 291 IGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKF 350
           I LG+L ++              + ++   + ++++G+GDLT+RL++  +D++G ++   
Sbjct: 294 ILLGVLYLL-----------YRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGI 342

Query: 351 NKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASAT 410
           N+F+  L  M++ V + S  ++   +            +     E   +  AV EM++  
Sbjct: 343 NQFIANLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATA 402

Query: 411 AEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEIS 470
            ++A N   TA     + +        + Q+ +++++L +E+      I +++     I+
Sbjct: 403 NDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINIT 462

Query: 471 TILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIA 530
            +L  I  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST EI+  ++
Sbjct: 463 QVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLS 522

Query: 531 GLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSL 590
            L+  + +A+  M  + +    + +   +    L AI  ++ QI+D+ TQIA+AAEEQS 
Sbjct: 523 NLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSS 582

Query: 591 VTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           V+A+I  N  ++ +++++LA   + S  +  +L    Q+L + + +FKL
Sbjct: 583 VSAEITRNMSAICDMANELARSGESSRNETVNLATANQQLEQIVGQFKL 631