Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  259 bits (663), Expect = 2e-73
 Identities = 194/650 (29%), Positives = 320/650 (49%), Gaps = 30/650 (4%)

Query: 8   VLFMRLSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKD--SWRAIESES-------RNTL 58
           ++   L++K+K++ +V  A+ ++   LV    Q   K+    R + SE        RN +
Sbjct: 5   MILNNLTIKQKILLTVTFAVLLSTI-LVGVISQRSAKNVVQQRMLGSEMPSLMMQIRNKI 63

Query: 59  QAHAKGI---GDWFLGKQLALKGLREEIERNPQLELVPHLRQ-TLQSGSFGLSYYGNEQG 114
                 +    +     ++ L+ L     +  + ++V  L+  T Q      SY   +  
Sbjct: 64  DLDISSLMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTA 123

Query: 115 EMFRQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLI 174
             + QD  L   +  P   GW+   + +G+      +     +  +    +    +G L+
Sbjct: 124 AYYTQDGFLR--ELTPAQDGWFFSYRDSGQERMLNVFTEANGEIKLFINYQQPNGRG-LV 180

Query: 175 GVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPT-EEMSAQLTIS 233
           G+A S   LD +++ + + ++   G+  LV+ KG++  HP    I K + + + +   I 
Sbjct: 181 GLAKS---LDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAANIG 237

Query: 234 KLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKG----VLEQPLNDMLMVQI 289
            L +   D +L    + G    + +  + + DW LV  + +     +L   +  +L+  +
Sbjct: 238 SL-LNRSDFNLIDTEIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIWTL 296

Query: 290 GIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADK 349
            I  G ++ +A++ +  V+R + +   +A    DI EG+GDL +RL V  +DE+  LA  
Sbjct: 297 IIAAGFIM-LAIVVAGSVSRPIAQ---VAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQG 352

Query: 350 FNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASA 409
           FN F+ ++   V  V + S  L   A   +  A Q  +    Q+D   MV TA+ EM + 
Sbjct: 353 FNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGAT 412

Query: 410 TAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEI 469
             EIASNA   A  A  +      G   + +++ +I+QL+ ++     +I  L  H   I
Sbjct: 413 VNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSI 472

Query: 470 STILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKI 529
             IL  IR I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT AST E+Q  I
Sbjct: 473 GGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMI 532

Query: 530 AGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQS 589
             LQ   + AVS M +S       V  V++   SL  IS+ I  ISDM  Q+A+A EEQS
Sbjct: 533 DKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQS 592

Query: 590 LVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            V  DIN N   + +++ + A  AQ + Q + +L+ +A  L+  +++FK+
Sbjct: 593 TVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642