Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (680), Expect = 2e-75
 Identities = 155/398 (38%), Positives = 235/398 (59%), Gaps = 6/398 (1%)

Query: 247 LSMDGRDKVL----MAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALL 302
           + +DG+   L    M +    T  +L + +D+   EQ ++D+    I IG  I  ++   
Sbjct: 238 IDLDGKSYALYRHGMQDYSGKTFGVLDIALDRSHSEQAMSDIRFKLIMIGF-IAFLIGTA 296

Query: 303 TSWFVARQLNE-LGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMV 361
            +WF+A+ +   +    NAL DIAEG+GDLTRR++V+S+DE+  LA  FN+F +++H  V
Sbjct: 297 IAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEKIHATV 356

Query: 362 KNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTA 421
             V + +  L   A+  +A   +  +  + Q  E   VATA+ EMA+   E+A NA + A
Sbjct: 357 AQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAA 416

Query: 422 KNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAE 481
             AT + +  E G   +++   +I  LA E+  A + I+ELE +  +I ++L  IR IA+
Sbjct: 417 DAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVLVVIRNIAD 476

Query: 482 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVS 541
           QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT AST EIQ  I  LQ    + VS
Sbjct: 477 QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQHSAKSTVS 536

Query: 542 VMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTES 601
            M  S    +  V+ V++ G +L+AI++A+  IS M  QIASAA EQ  V+A+IN N  +
Sbjct: 537 TMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNVNN 596

Query: 602 VREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           + +++    E A Q+ +    L  ++  L   +++F++
Sbjct: 597 INDITINATESAVQTARAGDELAQLSMRLTTLLAQFRI 634



 Score = 28.9 bits (63), Expect = 7e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 541 SVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSL 590
           S   E HKL ET+VA++  +G   QA++  I    ++ +  A    E  L
Sbjct: 40  SEQRELHKLYETAVANIVSSGQRAQAMATLISLTPEIQSNFAERDREALL 89