Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  217 bits (552), Expect = 1e-60
 Identities = 153/459 (33%), Positives = 243/459 (52%), Gaps = 20/459 (4%)

Query: 197 GKGYAILVNQKGKIVAH---------PTQDLIL-KPTEEMSAQLTISKLN-IAAKDHSLF 245
           G GY IL++   +I+AH           Q+  L   T  ++  L+ ++ N  +  ++ + 
Sbjct: 91  GVGYFILIDDNNQILAHGESASMIGTSAQNFTLPNGTNPLTTLLSQARQNGKSTLEYPIA 150

Query: 246 Q-LSMDGRDKVLMAEEVANTDWLLVM---VMD-KGVLEQPLNDMLMVQIGIGLGILLVMA 300
             +S    DK+  A       W L+    + D K  L + + D L++   I + I     
Sbjct: 151 NPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVKESLYEVMVDYLIIMFLISVPIFAFFL 210

Query: 301 LLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQM 360
           +L     +     L +   AL DIA+G+GDL++RL  + +DEV  LA  FN F  ++  M
Sbjct: 211 VLNHSITS----PLNDAIEALEDIAQGEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDM 266

Query: 361 VKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENT 420
           V +++ +  +L   A     +  ++++       E   VATAV +M S T E+ASN +  
Sbjct: 267 VGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGSVATAVNQMLSTTHEMASNTQQA 326

Query: 421 AKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIA 480
           A  AT      +     +  + +  ++L QEL  +  I  +L   + +I +IL  IR IA
Sbjct: 327 ADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAITQKLGQASGQIGSILDVIRAIA 386

Query: 481 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAV 540
           EQTNLLALNAAIEAARAG  GRGFAVVADEVR L+ RT  ST EIQ  I+ +Q    + +
Sbjct: 387 EQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRTQDSTNEIQKIISEIQTGVGSVM 446

Query: 541 SVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTE 600
              +++ +  E   A   + G ++ AI E I  ISDM TQ+ASA EEQSLVT +IN N  
Sbjct: 447 QSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMNTQLASATEEQSLVTEEINRNIC 506

Query: 601 SVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           ++ E+++   +  + + + A+SL  ++Q+++  + +FK+
Sbjct: 507 NISELTEVSVKANESNSRAAQSLQDISQDMSHTLGQFKI 545