Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  562 bits (1449), Expect = e-164
 Identities = 305/630 (48%), Positives = 420/630 (66%), Gaps = 1/630 (0%)

Query: 11  MRLSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFL 70
           MR +LK +++FS + A+ +T A LV+         +    + E        A+GIG W  
Sbjct: 1   MRSTLKTRLLFSSLFAVFITVAVLVSISSYVIRNHAIDNTQGEIDQLANTFAEGIGLWMQ 60

Query: 71  GKQLALKGLREEIERNPQLELVPHLRQTLQSGSFGLSYYGNEQGEMFRQDPSLNTADYDP 130
            ++ A+  L++ +E +P +++ P+L Q   +  F L+Y+G+EQG M+RQDP+LNTA+YDP
Sbjct: 61  DRKTAITSLKKTVEADPNVQITPYLLQAHNAMGFALTYFGDEQGNMYRQDPALNTANYDP 120

Query: 131 RVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIKDV 190
           R R WY +AKAA   + T PYVS T++  VVT+AEPV   G+L GVAA+NL +D+L   V
Sbjct: 121 RERPWYMDAKAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTIDQLTDAV 180

Query: 191 LAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQLSMD 250
             +EVPGKGY ++V+  G I++HP   L  +   ++ +  T S L+  A  +++ +  +D
Sbjct: 181 QRLEVPGKGYTLMVDTAGLIISHPNTQLNNQQLTKIDSHFTPSWLSQRANANTMEERELD 240

Query: 251 GRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSWFVARQ 310
           G  +++    V +TDW L+ VM+K  +      +      +G+G+L++  L+       Q
Sbjct: 241 GGTQLVYVAAVPSTDWALIFVMNKQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIFKMQ 300

Query: 311 LNELGNIANALADIAEGDGDLTRRLDV-RSQDEVGLLADKFNKFVDRLHQMVKNVREVSV 369
             +L  +A AL DIAEGDGDLT R+    S DE+G+LA  FN+FV+RLH M+  +  ++ 
Sbjct: 301 FKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAG 360

Query: 370 ALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSVQ 429
            L   A  ++ASA   S+RI  QQDE+TMVATAVTEMASAT EIASNAE+TA+ A  +V 
Sbjct: 361 QLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVS 420

Query: 430 LGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLALN 489
           L   G  Q+ QS+QSI  LA E+  A RIISEL  H+ +I++IL TI GIAEQTNLLALN
Sbjct: 421 LSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALN 480

Query: 490 AAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKL 549
           AAIEAARAGEQGRGFAVVADEVRVLSQRTH+ST+EIQ  I  LQ+    AV  MT+SH +
Sbjct: 481 AAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDM 540

Query: 550 VETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQL 609
            ETSVAD N    SL  IS+AI +ISDMA+QIA+AAEEQ+ VT++IN NTES+REVS+ L
Sbjct: 541 AETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENL 600

Query: 610 AEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           + EAQ ++ Q++ L  +A  L +E+SRFKL
Sbjct: 601 SIEAQSAMVQSQELAHLAASLQQEVSRFKL 630