Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  233 bits (593), Expect = 2e-65
 Identities = 158/470 (33%), Positives = 252/470 (53%), Gaps = 36/470 (7%)

Query: 199 GYAILVNQKGKIVAHPTQDLI-----LKPTEEMSAQLTISKLNIAAKDHSLFQL------ 247
           GY  + + +GK + H     +     +  T+    ++ +  L+ A +    F        
Sbjct: 92  GYFFMYDSQGKNIFHALMPNLEGQNKIDMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPN 151

Query: 248 SMDGRDKVLMAEEVANTDWLL----------VMVMD--KGVLEQPLNDMLMVQIGIGLGI 295
           + +  +K+     V  TDW+L           +V D  + V EQ     LM+ +     I
Sbjct: 152 TNEQIEKISFVMMVPGTDWMLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILL-----I 206

Query: 296 LLVMALLTSWFVA----RQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFN 351
            LV+   T++ +     R +  + N+A+ L DIA+G+GDLT+RL V+ +DE+  L   FN
Sbjct: 207 ALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFN 266

Query: 352 KFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATA 411
            FVD+L  ++ +V   +  +   A+         S ++ +  +E   V TA+TEM+S  +
Sbjct: 267 LFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTAS 326

Query: 412 EIASNAENTAKNATQSVQLGEDGFAQ--MQQSKQSIDQLAQELTGAVRIISELEVHANEI 469
           E+A N    A+ ATQ+   G+   AQ  +  S + I  L +++  A   I  L   + +I
Sbjct: 327 EVAQNTTQVAE-ATQAAT-GDVANAQRCVDASLEEIAALMEQINHAAGSIKSLSEQSQKI 384

Query: 470 STILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKI 529
           +++LS I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT AST EI   +
Sbjct: 385 NSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEML 444

Query: 530 AGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQS 589
           + L K+ + AV  M ES +    SV        SL +++ A+  I+DM+TQIA+AA EQS
Sbjct: 445 SALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSVTSAVTAINDMSTQIATAATEQS 504

Query: 590 LVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            VT +IN N  +++E+ ++L   ++ + + ++++      L   + +FK+
Sbjct: 505 SVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEGTNLGNLVGQFKI 554