Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  267 bits (683), Expect = 9e-76
 Identities = 152/374 (40%), Positives = 229/374 (61%), Gaps = 2/374 (0%)

Query: 267 LLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSWFVARQLNE-LGNIANALADIA 325
           +L + +D+   EQ ++D+ +  I IG+ I L++    +WF+A+ +   +    +AL DIA
Sbjct: 262 VLDIALDRSHSEQAMSDIRLKLIMIGV-IALLIGTAIAWFIAKSITRPIAETTDALNDIA 320

Query: 326 EGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQA 385
           EG+GDLTRR++V+S+DE+  LA  FN+F +++H  V  V + +  L   A+  +A   + 
Sbjct: 321 EGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHET 380

Query: 386 SKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSI 445
            +    Q  E   VATA+ EMA+   E+A NA + A  AT + +  E G   +++   +I
Sbjct: 381 QQMANRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTI 440

Query: 446 DQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFA 505
             LA E+  A   I+ELE +  +I ++L  IR IA+QTNLLALNAAIEAARAGEQGRGFA
Sbjct: 441 SLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFA 500

Query: 506 VVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQ 565
           VVADEVR L+ RT AST EIQ  I  LQ+     VS M  S    ++ V+ V++ G++L+
Sbjct: 501 VVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALE 560

Query: 566 AISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHA 625
           AI++A+  IS M  QIASAA EQ  V+A+IN N  ++ +++    E A Q+ +    L  
Sbjct: 561 AITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQ 620

Query: 626 MAQELNKEISRFKL 639
           ++  L   +S+FK+
Sbjct: 621 LSMRLTTLLSQFKI 634



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 541 SVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSL 590
           S   E HKL ET+VA++  +G   QA++  I    ++ +  A+   ++ L
Sbjct: 40  SEQRELHKLYETAVANIASSGQRAQAMATLISLTPEIQSSFAARDHDELL 89