Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  228 bits (581), Expect = 5e-64
 Identities = 154/471 (32%), Positives = 249/471 (52%), Gaps = 26/471 (5%)

Query: 193 IEVPGKGYAILVNQKGKIVAHPTQDLI-----LKPTEEMSAQLTISKLNIAAKDHSLFQL 247
           I     GY  L + +GK + H     +     +  T+    ++ +  LN A      F  
Sbjct: 86  IRFGSSGYFFLYDSQGKNLFHAVMPNLEGQNKIDMTDPRGTKIIVGLLNAAKNGDGNFSF 145

Query: 248 ------SMDGRDKVLMAEEVANTDWLL---VMVMDKGVLEQPLNDMLMVQIGIGLGILLV 298
                 + +  +K+  +  +  TDW+L     + D   + +     +  Q+      +L+
Sbjct: 146 YFQKPNTNEQIEKIGYSMMIPGTDWMLGTGAYIDDIDAVVEDYRTTVTEQMIDKSYAILL 205

Query: 299 MALLTSWFVA--------RQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKF 350
           +ALL +   A        R +  + N+A+ L DIA+G+GDLT+RL V+  DE+  L   F
Sbjct: 206 IALLLAAITAPVILVTAQRMVTPIKNMADNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSF 265

Query: 351 NKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASAT 410
           N FVD+L  ++ +V   +  +   A+         S+++ +  +E   V TA+TEM++  
Sbjct: 266 NLFVDKLQTIIGDVAHATAKVKTAANAIHDQTKVMSRQLISHNNETDQVVTAITEMSATA 325

Query: 411 AEIASNAENTAKNATQSVQLGEDGFAQ--MQQSKQSIDQLAQELTGAVRIISELEVHANE 468
           +E+A N    A+ AT +   G+   AQ  +  S + I  L  ++  A   I  L   + +
Sbjct: 326 SEVAQNTTQVAE-ATHAAT-GDVANAQRCVDASLEEISALMAQINNAASNIQSLSEQSQK 383

Query: 469 ISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTK 528
           I+++LS I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT +ST EI   
Sbjct: 384 INSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQSSTLEINEM 443

Query: 529 IAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQ 588
           ++ L K+ + AV  M ES +    SV        SL +++ A+  I+DM+TQIA+AA EQ
Sbjct: 444 LSELHKLVSLAVKTMEESQQSCIRSVDSSRAISESLGSVTSAVTAINDMSTQIATAATEQ 503

Query: 589 SLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           S VT +IN N  +++E+ ++L   ++++   ++++      L K + +FK+
Sbjct: 504 SSVTEEINRNVFAIQEIVNELLHSSEEAASVSQTVSQEGLNLGKLVGQFKI 554