Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  228 bits (581), Expect = 5e-64
 Identities = 156/461 (33%), Positives = 257/461 (55%), Gaps = 30/461 (6%)

Query: 197 GKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDH--SLFQLSMDGRDK 254
           G  Y  ++++   I+ HP     +KP E +S Q+     N  A+ +  S+ +L  +G+  
Sbjct: 85  GDNYLFVIDETRHIIVHP-----VKP-ELVSQQMG----NNGAEQYWFSMVELGRNGQQG 134

Query: 255 VLMAEEVANTD-----WLLVM-------VMDKGVLEQPLNDMLMVQIGIGLGILLVMALL 302
           VL    V           LVM       ++  G+L Q + + +  +  +  G  L++ LL
Sbjct: 135 VLQYPWVTGNGKKAQKMSLVMGFKPWGWILGSGILLQDIENTIWHEYVLMGGTTLILILL 194

Query: 303 TS---WFVARQLNE-LGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLH 358
            +   + ++R + + L  + NA+  IA G+  LT +L V  +DE+  LA   N+ +  + 
Sbjct: 195 MAALGYIISRSIVQPLDQVNNAMQIIATGN--LTPQLAVTGKDELAALAHNINQSMASIR 252

Query: 359 QMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAE 418
             +      +  ++Q A   A++A + ++ +  Q+D++  +ATA+ EM++  A++A+NAE
Sbjct: 253 TALAEANHSADNVSQAASRIASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAE 312

Query: 419 NTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRG 478
           +TAK+  ++ +    G   +  S   I  LA+E+  A + +++L+    +IS + + I  
Sbjct: 313 STAKDTKEATREAGLGDKDVHASVDGIHALAKEVEQATQQVNKLKEEIMQISEVTAVISA 372

Query: 479 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTT 538
           I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  STEEIQ  I+ LQ+   +
Sbjct: 373 ISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTRQSTEEIQNTISLLQQRAVS 432

Query: 539 AVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVN 598
           A + M  S  L E SV    + G  L  I   I+ +SDMATQIA+AAEEQS V  ++N N
Sbjct: 433 AANAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIKHVSDMATQIATAAEEQSAVAEEMNRN 492

Query: 599 TESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
              +   + +++E A    Q+++SL  ++  LN +++ FKL
Sbjct: 493 VCGINSSALEVSESATYLAQESESLAELSLNLNNKLAAFKL 533