Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (586), Expect = 1e-64
 Identities = 138/354 (38%), Positives = 213/354 (60%), Gaps = 2/354 (0%)

Query: 288 QIGIGLGILL-VMALLTSWFVARQL-NELGNIANALADIAEGDGDLTRRLDVRSQDEVGL 345
           QI + +  L+ ++AL+ ++F  + + N + +I + + DI +GDG+LT+R+ +  QDE+G 
Sbjct: 189 QISVTIATLVAIVALVIAYFGPKIIVNAIRDITDRINDIVDGDGNLTQRIPITRQDEIGE 248

Query: 346 LADKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTE 405
           LA+ FN FV +L QMV  +   +  ++Q  ++ A  +T        Q+  +  + TAV E
Sbjct: 249 LANAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGISYEQEQFVDTIVTAVNE 308

Query: 406 MASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVH 465
           M++A  E+ASNA +TA   T+      +G   + QS   I QL++ +  AV +I +L V+
Sbjct: 309 MSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSESVKQAVAVIEKLSVN 368

Query: 466 ANEISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEI 525
           +  I+++L  IR IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST++I
Sbjct: 369 SANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTETSTQDI 428

Query: 526 QTKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAA 585
           Q  I  LQ+    AV  +     L  ++V   +QT  +L  I  +  ++S+M+TQ A+A 
Sbjct: 429 QRMIEELQRGVNDAVKSIESGASLTNSTVTLASQTQDALDEILNSTSKVSEMSTQTATAT 488

Query: 586 EEQSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           EEQ+ VT +IN N   + + +       Q++ Q   +   +   L KE+SRFK+
Sbjct: 489 EEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIVVNTQTICSNLQKEVSRFKV 542



 Score = 35.0 bits (79), Expect = 9e-06
 Identities = 74/370 (20%), Positives = 143/370 (38%), Gaps = 49/370 (13%)

Query: 142 AGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIKDV------LAIEV 195
           A +  TT+  +SVT+ TLV  +A  + Y G  I V A     D+ I D+      L   +
Sbjct: 180 ASEQATTQTQISVTIATLVAIVALVIAYFGPKIIVNAIRDITDR-INDIVDGDGNLTQRI 238

Query: 196 P---GKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQLSMDGR 252
           P         L N     VA   Q +I   ++      T+   N+A K  +   +S +  
Sbjct: 239 PITRQDEIGELANAFNLFVAQLQQMVIAIISQTKDVSQTVE--NLATKSTTTIGISYEQE 296

Query: 253 ---DKVLMA--------EEVA----NTDWLLVMVMD-----KGVLEQPLNDMLMVQIGIG 292
              D ++ A         EVA    +T   +  V D     K +L Q +N +  +   + 
Sbjct: 297 QFVDTIVTAVNEMSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSESVK 356

Query: 293 LGILLVMAL-LTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVG----LLA 347
             + ++  L + S  +A  L+ + +IA     +A     L   ++     E G    ++A
Sbjct: 357 QAVAVIEKLSVNSANIASVLDVIRSIAEQTNLLA-----LNAAIEAARAGEQGRGFAVVA 411

Query: 348 DKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMA 407
           D+      R     ++++ +   L +G + A        K I +         T  ++  
Sbjct: 412 DEVRTLASRTETSTQDIQRMIEELQRGVNDAV-------KSIESGASLTNSTVTLASQTQ 464

Query: 408 SATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHAN 467
            A  EI ++    ++ +TQ+    E+     ++  +++ +L+ +      +I E +    
Sbjct: 465 DALDEILNSTSKVSEMSTQTATATEEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIVV 524

Query: 468 EISTILSTIR 477
              TI S ++
Sbjct: 525 NTQTICSNLQ 534