Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (568), Expect = 2e-62
 Identities = 143/408 (35%), Positives = 222/408 (54%), Gaps = 13/408 (3%)

Query: 234 KLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGL 293
           +L ++ KD ++ +L    +     A+E+ N   L +  +D         +   V IGI +
Sbjct: 224 QLGLSEKDGTMAKLIAANKLTEASADELHN---LALKAIDD-------TESSSVNIGILV 273

Query: 294 GIL--LVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFN 351
            ++  L++A++T   +   +  +  I   ++ I E   DLT R D  +QDE+G +A  FN
Sbjct: 274 FVIIALILAVITYLIIRSIITPVERITQVISRI-EVSKDLTLRCDASTQDELGEIAQHFN 332

Query: 352 KFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATA 411
             V    Q+++ V +    +       + +A  AS+ +  Q +E  MVATA+TEM +   
Sbjct: 333 SMVGSFQQLIEQVIDSVATINTSCKSVSENAMLASEGVAQQLNETDMVATAITEMGATID 392

Query: 412 EIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEIST 471
           EIA   E  A  A ++    + G  +++Q+   I QL++++  +  ++ ELE  +  I +
Sbjct: 393 EIAKTTELAALKAGKTHDNAQLGQTEVEQTILKIRQLSEQINSSASVVDELERDSETIGS 452

Query: 472 ILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAG 531
           +L  IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST+EI   I  
Sbjct: 453 VLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQTSTQEIANIIQT 512

Query: 532 LQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLV 591
           LQ  T   V +M  S K    S       G  L+ I+  +  I DM+TQIA+A EEQS+V
Sbjct: 513 LQSRTRAIVQLMDASQKQGAESAEQAAAAGELLKLINTDVHNIMDMSTQIAAAIEEQSMV 572

Query: 592 TADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            A++N N   +R++++  +  A  +   +  L + A+ L   +S FK+
Sbjct: 573 AAEVNKNVVVIRDIAEDSSRAADANASASDELKSRAEYLVSAVSHFKI 620