Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  265 bits (678), Expect = 4e-75
 Identities = 198/650 (30%), Positives = 324/650 (49%), Gaps = 30/650 (4%)

Query: 8   VLFMRLSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKD--SWRAIESES-------RNTL 58
           ++   L++K+K++ +V  A+ ++   LV    Q   K     R + SE        RN +
Sbjct: 1   MILNNLTIKQKILLTVTFAVLLSTI-LVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKI 59

Query: 59  QAHAKGI---GDWFLGKQLALKGLREEIERNPQLELVPHLRQ-TLQSGSFGLSYYGNEQG 114
           +     +    +     ++ L+ L     +  + ++V  L+  T Q      SY   +  
Sbjct: 60  ELDISSLMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTA 119

Query: 115 EMFRQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLI 174
             + QD  L      P   GW+   + +G+      +     +  +    +    +G L+
Sbjct: 120 AYYTQDGFLRVLT--PAQDGWFFGYRDSGQERMLNVFTEANGEVKLFINYQQPNGRG-LV 176

Query: 175 GVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPT-EEMSAQLTIS 233
           G+A S   LD +++ + + ++   G+  LV+ KG++  HP    I K + + + +   IS
Sbjct: 177 GLAKS---LDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANIS 233

Query: 234 KLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLND----MLMVQI 289
            L +   D +L    + G +  + +  + + DW LV  + +  +   L D    +L+  +
Sbjct: 234 SL-LNRSDFNLIDTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTL 292

Query: 290 GIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADK 349
            I  G ++ +A++ +  V+R + +   +A    DI EG+GDL +RL V+ +DE+  LA  
Sbjct: 293 IIAAGFIM-LAIVVAGSVSRPIAQ---VAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQG 348

Query: 350 FNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASA 409
           FN F+ ++   V  V + S  L   A   +  A Q  +    Q+D   MV TA+ EM + 
Sbjct: 349 FNSFISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGAT 408

Query: 410 TAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEI 469
             EIASNA   A  A  +      G   + +++ +I+QL+Q++     +I  L  H   I
Sbjct: 409 VNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSI 468

Query: 470 STILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKI 529
             IL  IR I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT AST E+Q  I
Sbjct: 469 GGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMI 528

Query: 530 AGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQS 589
             LQ   + AV+ M +S       VA V++   SL  IS+ I  ISDM  Q+A+A EEQS
Sbjct: 529 DKLQSEASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQS 588

Query: 590 LVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
            V  DIN N   + E++ + A  AQ + Q + +L+ +A  L+  +++FK+
Sbjct: 589 TVVEDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638