Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (421), Expect = 5e-46
 Identities = 95/281 (33%), Positives = 158/281 (56%), Gaps = 5/281 (1%)

Query: 11  IRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70
           I  FV +A+  NFT AA+ L VS +HVSRQ+  LEN +G  L  RTTR +SLT+ G ++Y
Sbjct: 7   ISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGTIYY 66

Query: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130
           R C Q  + +E+A  A  D     +G +++ +   + GE+ I  + + FM + P V  ++
Sbjct: 67  RHCRQLQTGLEEAERAITDLKDSPQGLVKLTAPVAY-GEKFIMPLLNDFMVQYPSVECNV 125

Query: 131 DFSSHRVDLIEEGFDVAFRMGKLEDASFVARKLTEIRMSTLASPAYFTLCGQPQHPKQLA 190
           D ++  +DLIE G+D+A R+GKL D+S +A+ L+       ASP+Y    G+P    +L 
Sbjct: 126 DLTNRTLDLIEGGYDLAIRLGKLADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLSELN 185

Query: 191 DHRCLTGSVKRWSYQHKETKQTLDVPVDGDLQCKNGRVLVRAALAHNGIIRVPTFYCHQE 250
            H CL G+   W +   E  +  +  V G L C +G  L  AAL   GI+++P +Y  ++
Sbjct: 186 QHNCLIGNHNYWRF--IEHGRERNFKVRGKLICNSGYALRDAALKGIGIVQLPDYYIEED 243

Query: 251 LARGELVEVFQDWHIPSVE-FSLIYHKDKYQPVRLKRFIEF 290
           +  G L+  F D H  + E    +Y ++++   +++  +++
Sbjct: 244 IHAGRLIS-FLDTHREAKEGIWALYPQNRHLSAKVRVLVDY 283