Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  198 bits (503), Expect = 6e-55
 Identities = 114/314 (36%), Positives = 173/314 (55%)

Query: 456 MSRDNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTG 515
           + +  DL  R+  +  DE+ Q+A+A N M +  Q  +   + T  +L+     +   M  
Sbjct: 177 VEKSGDLAARVPNRSDDEVGQMAKAFNAMQAGYQRVVNTVSQTAGRLDQGAAHLAAGMKE 236

Query: 516 TRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARD 575
            R  +  Q   TD V TA+NEM+A++  +++ A       Q A+     G  V + +   
Sbjct: 237 VRQGMLGQQSETDQVATAINEMTATVHHIAQHATATRDQSQTADALAGSGKVVVDRVQVS 296

Query: 576 MTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGF 635
           +  ++  +    E I R+  +SQ I  V++VI +IAEQTNLLALNAAIEAARAGE GRGF
Sbjct: 297 IAGLSSGVQQTAEMIQRMAEDSQKINGVVNVIHSIAEQTNLLALNAAIEAARAGEMGRGF 356

Query: 636 AVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDML 695
           AVVADEVRNLA + QTST+EI T +  LQ  T+  V+ ++E+++     +       D L
Sbjct: 357 AVVADEVRNLAKRVQTSTDEITTMVSTLQSGTRDAVDFMQESSHKAEECLQQAREAGDAL 416

Query: 696 KQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELS 755
             I   + ++ E N QIA A +QQ  V EE+N  + SI DV+    +Q  +  +  +EL+
Sbjct: 417 AAIAGAVAQMRESNTQIAVAAQQQSQVAEEMNRAVVSIRDVTERTVIQTVDSASTSDELA 476

Query: 756 DEAMELSKRMGQFR 769
             A EL+  +GQ +
Sbjct: 477 TLAGELNAAIGQLK 490



 Score = 35.8 bits (81), Expect = 6e-06
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 441 GISKPIRDSISQIQRMSRDNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTD 500
           G+S  ++ +   IQRM+ D           S +I  +   ++ +           A    
Sbjct: 299 GLSSGVQQTAEMIQRMAED-----------SQKINGVVNVIHSIAEQTNLLALNAAIEAA 347

Query: 501 KLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQ----RAATFVQ 556
           +     +         RN        TD + T V+ + +   +  +F Q    +A   +Q
Sbjct: 348 RAGEMGRGFAVVADEVRNLAKRVQTSTDEITTMVSTLQSGTRDAVDFMQESSHKAEECLQ 407

Query: 557 EANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHE-SQSIASVLDVIQAIAEQTN 615
           +A + G    ++   +A+ M   N Q+A A +  +++  E ++++ S+ DV +    QT 
Sbjct: 408 QAREAGDALAAIAGAVAQ-MRESNTQIAVAAQQQSQVAEEMNRAVVSIRDVTERTVIQTV 466

Query: 616 LLALNAAIEAARAGE 630
             A  +   A  AGE
Sbjct: 467 DSASTSDELATLAGE 481