Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  224 bits (570), Expect = 1e-62
 Identities = 144/392 (36%), Positives = 213/392 (54%), Gaps = 18/392 (4%)

Query: 391 GLRWALVTEMQADEALADIAKLSD-------ELIMKVLIAIVIGAVIATLAAWMVGNGIS 443
           G  W L T    D+  A +   S        E  + + +  ++ A I  +A W   + + 
Sbjct: 171 GKDWLLGTGAYLDDIDAAVDTYSQSARQAMWEKAVAIFMMSLVLAFITLIAIWSAAHRMV 230

Query: 444 KPIRDSISQIQRMSR-DNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKL 502
           KPIR  +  +  +++ + DLT RLS +G DEI +L  A N+ +  LQ  I   A TT ++
Sbjct: 231 KPIRAMVDSLNDIAKGEGDLTARLSVRGEDEIAELGIAFNQFVDKLQGIIRDVADTTGRV 290

Query: 503 NSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKG 562
                 I    +   N ++  +  TD VVTA+ EMS++  EV++      T V EA Q  
Sbjct: 291 KQAAVDIDRQTSEMANQLNSHNNETDQVVTAITEMSSTAAEVAQ----NTTQVAEATQAA 346

Query: 563 HGGVS-----VGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLL 617
            G V+     V   LA +++++  Q+  A   I  L+ +SQ I SVL VI  IAEQTNLL
Sbjct: 347 TGDVAKAQACVDTSLA-EISNLMSQVNDAAANIQSLSEQSQKINSVLSVIGGIAEQTNLL 405

Query: 618 ALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEA 677
           ALNAAIEAARAGEQGRGFAVVADEVRNLA++TQ ST EI   +  L +   S V  ++E+
Sbjct: 406 ALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEINEMLTDLHRLVSSAVKTMDES 465

Query: 678 NNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVS 737
            ++  R V    + ++ L  +   +  +N+M+ QIA A  +Q  VTEEIN N+ +I ++ 
Sbjct: 466 QHSCQRSVEASTAISESLGSVTSAVTAINDMSTQIAAAATEQSSVTEEINRNVYAIQEIV 525

Query: 738 ASVTVQVGEVNAIVNELSDEAMELSKRMGQFR 769
            ++ V   E   +   +S E  +LS  +GQF+
Sbjct: 526 NALLVSSQEARTVSRTVSTEGAQLSNLVGQFK 557