Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  212 bits (540), Expect = 4e-59
 Identities = 135/416 (32%), Positives = 227/416 (54%), Gaps = 12/416 (2%)

Query: 359 VDKALRGESGLMMESTHASVQLLSAYTPLDALGLRWALVTEMQADEALADIAKLSDELI- 417
           +DK L G+SG +  +   S  ++  Y  +D +  + A +  +Q    +AD+ +   E + 
Sbjct: 130 IDK-LSGKSGSV--TGQFSADIIPLYQVIDPISGKVAELVTLQIH--IADLEREQVETLH 184

Query: 418 ---MKVLIAIVIGAVIAT--LAAWMVGNGISKPIRDSISQIQRMSRDNDLTVRLSEQGSD 472
              +K  I + + AV+ T     W V  G+  P+ +   +++++   +D+TV  +    D
Sbjct: 185 SSSLKWFIGLAVFAVLITSFFGVW-VNRGVMTPVTEIRQKLRQIREKSDMTVSFTVFRDD 243

Query: 473 EIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVT 532
           E+  +A+ LN +++HL+  +   A     L      +        + + +Q   T+   T
Sbjct: 244 ELGHIAKDLNGVVNHLKGILKNIAEAASTLGDSADELNEFTRQANDRMFKQQSETEQTAT 303

Query: 533 AVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIAR 592
           A+NEM+A++ EV++ +  AA   + A++    G S+  +    M+ +  Q+      I  
Sbjct: 304 AMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMSVLASQIQGTAAVIGE 363

Query: 593 LNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTS 652
           L  ESQ+I  VLDVI++IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T  S
Sbjct: 364 LATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTSES 423

Query: 653 TEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQI 712
           T EI + I+ LQ+  +S VN +E+    V     + ++    L+ IV  ++ + ++N  I
Sbjct: 424 TREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQDIVASVDSITQLNTHI 483

Query: 713 ATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMELSKRMGQF 768
           ATA ++Q  V E IN +I +ISD++   T    +++  V++L+  A  +  ++G F
Sbjct: 484 ATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAVHQLAQLAGHMRTQVGTF 539