Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  276 bits (707), Expect = 2e-78
 Identities = 202/656 (30%), Positives = 339/656 (51%), Gaps = 55/656 (8%)

Query: 130 RLSLLSRSAEALQARYIASNPNPL----GAKHEWESDSLGNAYDALHQKYHPGIKQYLEQ 185
           +L  + +  E     Y A N   L     A  +  S S G++   +   +     Q +++
Sbjct: 41  KLEAVRQLKENQLTEYFADNRADLKMLAAAMVDMVSFSDGSSLKTITHAHEDYFTQLVKE 100

Query: 186 FGLYDVFMVDNDGHVVYTVFKELDFATNLLSGPYKESGLARAYVQAKTLANNQYYLDDFA 245
           +G YDVF++D DG + Y+  KE D+ +NL+SGP+KE+ LA  +     L++ Q  + DF 
Sbjct: 101 YGYYDVFVIDPDGDLAYSYAKEADYGSNLISGPFKETNLADLF--RSVLSSQQIEMVDFM 158

Query: 246 PYYPSYEAAASFISTPIFNGSTRVGVLIFQMPVDEINSIMTFDSRWKENGLGNTGQSYLV 305
           PY PS    A+FI  P+      + V+  Q+ +D IN +M+     +  G+G TG+SYLV
Sbjct: 159 PYTPSGGKPAAFIGMPVVYHGQLLAVVALQLSIDRINQLMS-----QRAGMGETGESYLV 213

Query: 306 GSDHLMRSQPRLLLEDASAFIGTLNSLTGDRAAINQIRSKQSAIGLLKVSSQAVDKALRG 365
           G+D+ MRS         ++F+  +      R+ I          G+  V+S+   KAL G
Sbjct: 214 GNDYRMRS---------NSFLDPIR-----RSVIASFSGSVDENGINTVASR---KALNG 256

Query: 366 ESGLMMESTHASVQLLSAYTPLD---ALGLRWALVTEMQADEALADIAKLSDEL--IMKV 420
           ESG+ + + +    +LSA+ P+    A  +RWAL+ E+   EAL  +  + + L  ++ +
Sbjct: 257 ESGMEVITDYQDNLVLSAFRPISPDFAGKIRWALIVEIDEAEALESVVAIKNSLWIVLGI 316

Query: 421 LIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRMSR---DNDLTVRLSEQGSDEIRQL 477
            + +V+G       A ++   + +P+    + +Q +S      DL +   +    E   +
Sbjct: 317 SVLVVVGF------ARLILRSVLRPLGGEPAVMQHISERVAGGDLAIDFCQS---EKTGV 367

Query: 478 AQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEM 537
             A+  M  +L++ + +    T++L++ ++        T  S+ +Q    + V  ++NEM
Sbjct: 368 YLAMETMSHNLRELVSRIVGITEQLSAASEQTRVASEETNQSLFQQQANIERVSASINEM 427

Query: 538 SASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAV----EAIARL 593
           +A+I +V+  A++ A    ++ Q  +G   + ++  R        +ASA+      I  +
Sbjct: 428 TATIADVAHNARQVA----DSTQAAYGLSQIADKQVRSNIGTINGLASAITEATNVIRSV 483

Query: 594 NHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTST 653
             +SQ I+ VL+VI+ IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA KT  ST
Sbjct: 484 ELQSQGISKVLEVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQKTAQST 543

Query: 654 EEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIA 713
            +I   I  LQ+ TQ+ V  + E+   + + V +     + ++     +  +     QIA
Sbjct: 544 RDIEEMIALLQQGTQNAVGVMGESTVHLQQTVDSAECTAEAIRNTHIEIESIAANAEQIA 603

Query: 714 TATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVN-ELSDEAMELSKRMGQF 768
           TA  QQ    EEI+ ++  ISD +ASV     E  A+ + +LS+ A++L    G+F
Sbjct: 604 TAASQQTLAAEEISQSLAVISD-AASVNAASSEQTAVASTQLSELALDLKSITGRF 658



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 1  MKIANKIVLSMTLLSIFSVVIAGVWVGWSAATLSKQAIYERASNQLLSVRETKKSEIERY 60
          M     I   +  + +  +VIAGV     +  L+++A+  +  N+L +VR+ K++++  Y
Sbjct: 1  MSFKKGIWYGLLCIGLLPLVIAGV----VSEQLAERALKAQVYNKLEAVRQLKENQLTEY 56

Query: 61 LTRVAGQLVTLA----NMVSTVE--AMESLTQAYQAY 91
                 L  LA    +MVS  +  +++++T A++ Y
Sbjct: 57 FADNRADLKMLAAAMVDMVSFSDGSSLKTITHAHEDY 93