Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (534), Expect = 2e-58
 Identities = 177/616 (28%), Positives = 297/616 (48%), Gaps = 46/616 (7%)

Query: 166 NAYDALHQKYHPGIKQYLEQFGLYDVFMV-DNDGHVVYTVFKELDFATNLLSGPYKESGL 224
           N YD     Y   I   + + G  +++    +DG V +   +++D A+       KE G+
Sbjct: 123 NGYDGRDGDYTQKISHSVPEVGTLEIYYTRSDDGSVEH---QQVDDASEKYDATLKEFGV 179

Query: 225 ARA--YVQAKTLANNQYYLDDFAPYYPSYEAAASFISTPIFNGSTRVGVL-------IFQ 275
             A  Y+ AK                P   A  + ++ P+  G +  GV+       +FQ
Sbjct: 180 REAEWYLCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGVDVNLPVFQ 239

Query: 276 MPVDEINSIMTFDSRWKENGLGNTGQSYLVGSDHLMRSQPRLLLEDASAFIGTLNSLTGD 335
             +DE+++ + +  + K   L   G   +V + H  +    L    A +    L  L   
Sbjct: 240 KLIDELSASL-YQGKAKVTLLSQKG--LVVAASHYDKKARPLGESIAPSLASQLTGLHRQ 296

Query: 336 RAAINQIRSKQSAIGLLKVSSQAVDKAL-RGESGLMMESTHASVQLLSAYTPLDALGLRW 394
              + Q        G   + +  ++  L + +  L++E   A      AY   +A+    
Sbjct: 297 GGYLEQ--------GDNIIVAYPIEIPLAKAQWSLVIEVAKAD-----AYQAANAM---- 339

Query: 395 ALVTEMQADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQ 454
                   D+A++ +A     L+   LI  VI ++IA +   +V   I  P++   S+++
Sbjct: 340 --------DKAMSAMASSLGSLL---LIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVE 388

Query: 455 RM-SRDNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNM 513
            + S + DLT +++ +   E+  L   +N  ++ L+  I +      +  + +Q      
Sbjct: 389 NLASAEGDLTQQVTVESHAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIA 448

Query: 514 TGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELA 573
             T NSV+ Q+   +SVVTAVNEMSA+  EV++ +++ A+  +        G    ++  
Sbjct: 449 QQTHNSVNRQYSDIESVVTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAM 508

Query: 574 RDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGR 633
             +T ++Q+   A EA+ ++   S +I+ +L+VI AIAEQTNLLALNAAIEAARAGEQGR
Sbjct: 509 GYVTHMSQESLLAKEAVGKVAESSTNISKILEVISAIAEQTNLLALNAAIEAARAGEQGR 568

Query: 634 GFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTD 693
           GFAVVADEVR LA+KTQ+ST+EI   I+ LQ+E  S    I++  +   R VA   S   
Sbjct: 569 GFAVVADEVRALASKTQSSTDEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALS 628

Query: 694 MLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNE 753
            L  IV+ + E++     IATA E+Q  VTEE++ NIT ISD ++ +     E       
Sbjct: 629 SLNTIVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSAS 688

Query: 754 LSDEAMELSKRMGQFR 769
           L+    +  +++G+ +
Sbjct: 689 LAGLVEQQHQQLGKLK 704