Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (544), Expect = 1e-59
 Identities = 135/388 (34%), Positives = 205/388 (52%), Gaps = 10/388 (2%)

Query: 391 GLRWALVTEMQADEALADIAK--------LSDELIMKVLIAIVIGAVIATLAAWMVGNGI 442
           G  W L T    D+  A +          ++D+ +M +L A+V+ A+ A +   +    +
Sbjct: 167 GKDWILGTGAYTDDIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVVML-VAAQRM 225

Query: 443 SKPIRDSISQIQRMSR-DNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDK 501
             PI + +  ++ +++ + DLT RL  QGSDEI  L +A N+ +  LQ  I   A  T +
Sbjct: 226 VNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVE 285

Query: 502 LNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQK 561
           + S    I+         +   +  TD VVTA+ EMSA+ +EV+    + A   Q A Q 
Sbjct: 286 VKSGADNISSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEATQAATQD 345

Query: 562 GHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNA 621
                   +    +++++  ++  A   I  LN +SQ I SVL VI  IAEQTNLLALNA
Sbjct: 346 VGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNA 405

Query: 622 AIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTV 681
           AIEAARAGEQGRGFAVVADEVR+LA++TQ ST EI   +  L       V+ +E +  + 
Sbjct: 406 AIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSC 465

Query: 682 VRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVT 741
            R V +  + +D L  +   +  +N+M+ QIATA  +Q  VTEEIN N+ +I ++   + 
Sbjct: 466 HRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELL 525

Query: 742 VQVGEVNAIVNELSDEAMELSKRMGQFR 769
                 +     L++E   L   +GQF+
Sbjct: 526 QASNSASDTSQGLANEGRNLDTLVGQFK 553