Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  229 bits (583), Expect = 4e-64
 Identities = 161/503 (32%), Positives = 280/503 (55%), Gaps = 29/503 (5%)

Query: 275 QMPVDEINSIMTFDSRWKENGLGNTGQSYLVGSDHLMR----SQPRLLLEDASAFIGTLN 330
           Q P   IN ++  +   K +G+   G S    +D++ +     Q R+ L D +  I    
Sbjct: 160 QTPTLFINYLVQIEG--KPSGVAGVGLSLNSLADNIKQYKIGEQGRVYLTDGNGQI---- 213

Query: 331 SLTGDRAAINQIRSKQ-SAIGLLKVSSQAVDKALRGESGLMMESTHASVQLLSAYTPLDA 389
            + G     +Q   KQ SA+G+     QA+   L  ++    E  +  V  L A   + +
Sbjct: 214 KIHGQ----SQFAGKQLSALGIK--DPQAL---LSQQTFATSEYDNNGVDTLVASRYIPS 264

Query: 390 LGLRWALVTEMQADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIRDS 449
           +G  W L+ E+  DE    I K S +L    L+ +++ A+I   +AW++   IS P  + 
Sbjct: 265 IG--WYLIAEVPQDELFGAINKASWQL---ALMGLILAAIIMFTSAWLINRLIS-PFGEL 318

Query: 450 ISQIQRMSR-DNDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQT 508
              ++ +   + DL++RL +   DE   +A + N+ +++L  T+   + T + L    + 
Sbjct: 319 ADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQAVER 378

Query: 509 ITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQK-GHGGVS 567
           I +      + +++Q  + + V TA++EM  +  E++  A  AA   Q A+Q    G  S
Sbjct: 379 IDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASSANNAAENAQVADQSVNQGNQS 438

Query: 568 VGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAAR 627
           V N +A  + S+++Q+ +  E +++L  ++ SI +VL+VI+ ++EQTNLLALNAAIEAAR
Sbjct: 439 VQNTIA-SVASMSEQLLTTSETVSQLAEDASSIDTVLEVIRGVSEQTNLLALNAAIEAAR 497

Query: 628 AGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVAT 687
           AGEQGRGFAVVADEVR LA+++  STE+IR  I++LQ +T  VVN I ++ N   +    
Sbjct: 498 AGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQSQQE 557

Query: 688 CHSNTDMLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEV 747
              + + L  I + +  ++EM++QIATATE+Q  V  EIN ++T+I+D+S S +  V + 
Sbjct: 558 ASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVRQT 617

Query: 748 NAIVNELSDEAMELSKRMGQFRY 770
           +   ++L + A++L++ + +F++
Sbjct: 618 SLDCSDLREMAVQLNELVSRFKF 640