Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  255 bits (651), Expect = 6e-72
 Identities = 191/605 (31%), Positives = 296/605 (48%), Gaps = 55/605 (9%)

Query: 179 IKQYLEQFGLYDVFMVDNDGHVVYTVFKELDFATNLLSGPYKESGLARAYVQAKTLANNQ 238
           +K      G YD+F++ +DG V YTV KE D+ TNL +G Y+ SGLA+ + +  T ++  
Sbjct: 87  LKSLNRLLGFYDLFIISDDGTVFYTVAKEPDYGTNLRTGSYRSSGLAQLFEKTLT-SSGT 145

Query: 239 YYLDDFAPYYPSYEAAASFISTPIFNGSTRVGVLIFQMPVDEINSIMTFDSRWKENGLGN 298
            +L DF+ Y PS   AA+FI   +      + V+  Q+ ++ IN +M         G+G 
Sbjct: 146 VFLQDFSAYAPSNGQAAAFIGQAMLVNGRHI-VVAAQVSIERINRVMQI-----REGMGQ 199

Query: 299 TGQSYLVGSDHLMRSQPRLLLEDASAFIGTLNSLTGDRAAINQIRSKQSAIGLLKVSSQA 358
           TG++YL+G D+ MRS          +F+  +N           + S    I    V + A
Sbjct: 200 TGETYLIGPDNRMRSD---------SFLDPINRTV--------VASFAGTIANNGVDTLA 242

Query: 359 VDKALRGESGLMMESTHASVQLLSAYTPLDALGLRWALVTEMQADEALADIAKLSDELIM 418
           V  AL G  G+M    +    +LSAY+P+  +GL+W L+ E+   E    IA  +  ++ 
Sbjct: 243 VKAALAGNQGVMQVYDYKDNLVLSAYSPVVEMGLKWGLMAEIDVSE----IAAPAYHMMF 298

Query: 419 KVLIAIVIGAVIATLAAWMVGNGISKPIR---DSISQIQRMSRDNDLTVRLSEQGSDEIR 475
             ++   +  V+A  AA +V + + KP+    + +  +  +    DLT  L    SD   
Sbjct: 299 IGMLVCALSIVLAITAAKLVTSFVLKPLGGEPEDMCHLTSLIASGDLTHSLLHTQSDN-- 356

Query: 476 QLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVN 535
            L   L RM + L++ I Q      +L S  +  +  M     S+  Q + TD + TAV 
Sbjct: 357 HLMSWLARMQTKLKEIIGQLIGMGHELESAAEQNSAAMYQADCSIQLQAKETDMLATAVE 416

Query: 536 EMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNH 595
           EMS +  E+S    +++  V       H        L++++ S    +   +E+ A ++ 
Sbjct: 417 EMSYAAAEISTNTSKSSDEVSACTHSSH-------ILSQNLVSTRHSLKVTLESFAAIHQ 469

Query: 596 E-------SQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAK 648
           +       SQ I SVL++I AIAEQTNLL+LNAAIEAARAGE GRGFAVVADEVR LA K
Sbjct: 470 QVGHLEADSQKIGSVLEMINAIAEQTNLLSLNAAIEAARAGEHGRGFAVVADEVRQLAVK 529

Query: 649 TQTSTEEIRTKIDRLQKET----QSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNE 704
            Q +T++I   +  +Q ++    Q  V C  EA+ T         +  D+ K+    L  
Sbjct: 530 VQEATQDIGKVLQGIQHQSGVLAQHSVTCSSEASKTAEDAEGMQAAVDDIAKR----LET 585

Query: 705 LNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMELSKR 764
           L  + IQ ATA E+Q  V+  I   I  +S  +   +  + +V A    L   A +L   
Sbjct: 586 LRSLMIQTATAAEEQTTVSATIAQGIAGLSAAAEENSAAISQVAASTRSLLGLANQLGLT 645

Query: 765 MGQFR 769
             QF+
Sbjct: 646 TAQFK 650