Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (582), Expect = 6e-64
 Identities = 141/382 (36%), Positives = 215/382 (56%), Gaps = 20/382 (5%)

Query: 382 SAYTPLDALGLRWALVTEMQADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNG 441
           S+Y P     + W LV ++   E  A    L  + + ++LI  +I A    + A +V   
Sbjct: 261 SSYIP----SMDWYLVAQVPEAEVFA----LLRDAVYQILIWTLIIAAGFIMLAIVVAGS 312

Query: 442 ISKPIRDSISQIQRMSRD-----NDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFA 496
           +S+PI    +Q+  M RD      DL  RL   G DEI QLAQ  N  +S +QD++ + A
Sbjct: 313 VSRPI----AQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVA 368

Query: 497 HTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQ 556
            T+++L    + +++    T     EQ +RT  VVTA+NEM A++ E++  A +AA   +
Sbjct: 369 QTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAK 428

Query: 557 EANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNL 616
           +A+ + + G  V       +  ++  +    E I  L   ++SI  +LDVI+AI+EQTNL
Sbjct: 429 DADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNL 488

Query: 617 LALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEE 676
           LALNAAIEAARAGE GRGFAVVADEVRNLA++T  ST E++  ID+LQ E    V+ + +
Sbjct: 489 LALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQ 548

Query: 677 ANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDV 736
           +      GV      +  L  I   +  +++MNIQ+A ATE+Q  V E+IN N+T I+D+
Sbjct: 549 SRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDI 608

Query: 737 ---SASVTVQVGEVNAIVNELS 755
              +AS      + +  +N+L+
Sbjct: 609 TQRTASTAQAAAQASLALNQLA 630



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 39/231 (16%), Positives = 88/231 (38%), Gaps = 7/231 (3%)

Query: 543 EVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQSIAS 602
           E+++ AQ   +F+ +             +L      ++ Q    +E        +  + +
Sbjct: 345 EIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVT 404

Query: 603 VLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDR 662
            ++ + A   +    A  AA+ A  A  +     VV    R+   +     E++   I+ 
Sbjct: 405 AINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIES 464

Query: 663 LQKETQS------VVNCIEEANNTVVRGVATCHSNT-DMLKQIVDMLNELNEMNIQIATA 715
           L   T+S      V+  I E  N +    A   +   +  +    + +E+  +  + A +
Sbjct: 465 LATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAAS 524

Query: 716 TEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMELSKRMG 766
           T + +G+ +++ +  +      A    +  E    V+E S   + +SKR+G
Sbjct: 525 TNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIG 575



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 49/260 (18%), Positives = 108/260 (41%), Gaps = 16/260 (6%)

Query: 401 QADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRM--SR 458
           QA + L D  +  D  +M V     +GA +  +A+      ++    D+ S   ++  +R
Sbjct: 384 QAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTR 443

Query: 459 DNDLTVRLSEQGSDEIRQLAQALNRMLSHLQ------DTICQFAHTTD--KLNSHTQTIT 510
             D   +LS     ++ Q+ + +  + +H +      D I   +  T+   LN+  +   
Sbjct: 444 ARDTINQLSH----DVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAAR 499

Query: 511 HNMTGTRNSVSEQHERTDSVVTAV--NEMSASITEVSEFAQRAATFVQEANQKGHGGVSV 568
               G   +V     R  +  TA   NE+   I ++   A RA + + ++  + H GV+ 
Sbjct: 500 AGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTA 559

Query: 569 GNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARA 628
            +E ++ +  I++++    +   ++   ++  ++V++ I     + N +    A  A  A
Sbjct: 560 VDEASQSLVGISKRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTASTAQAA 619

Query: 629 GEQGRGFAVVADEVRNLAAK 648
            +       +A  +  L AK
Sbjct: 620 AQASLALNQLAHRLDTLVAK 639