Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  226 bits (577), Expect = 2e-63
 Identities = 136/369 (36%), Positives = 215/369 (58%), Gaps = 8/369 (2%)

Query: 402 ADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRMSR-DN 460
           +++A++DI     +LIM   IA +IG  IA    W +   I++PI ++ + +  ++  + 
Sbjct: 272 SEQAMSDIRF---KLIMIGFIAFLIGTAIA----WFIAKSITRPIAETTNALNDIAEGEG 324

Query: 461 DLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSV 520
           DLT R+  +  DEI QLA A NR    +  T+ Q + +T  L +  + ++     T+   
Sbjct: 325 DLTRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMA 384

Query: 521 SEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSIN 580
             QH  T+ V TA+NEM+A++ EV+  A  AA     A++    G  +  ++   ++ + 
Sbjct: 385 KRQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLA 444

Query: 581 QQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 640
            ++A A +AI  L   +  I SVL VI+ IA+QTNLLALNAAIEAARAGEQGRGFAVVAD
Sbjct: 445 DEIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVAD 504

Query: 641 EVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVD 700
           EVR LA++TQ ST EI+  I+ LQ   +S V+ +  +  T    V+  H   + L+ I  
Sbjct: 505 EVRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQ 564

Query: 701 MLNELNEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAME 760
            ++ +++MNIQIA+A  +Q  V+ EIN N+ +I+D++ + T    +     +EL+  +M 
Sbjct: 565 AVSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMR 624

Query: 761 LSKRMGQFR 769
           L+  + QFR
Sbjct: 625 LTTLLAQFR 633



 Score = 25.4 bits (54), Expect = 0.010
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 36  QAIYERASNQLLSVRETKKSEIERYLTRVAGQLVTLANMVSTV----EAMESLTQAYQAY 91
           QA        + +++ + KS +    T  A    T  N VS V    EA+E++TQA    
Sbjct: 514 QASTSEIQQMIEALQHSAKSTVSTMNTSTA----TTQNCVSLVHEAGEALEAITQAVSTI 569

Query: 92  PVEQVPASSLSALKDYYTTQFGQNYQKLND 121
               +  +S +  +   + +  +N   +ND
Sbjct: 570 SQMNIQIASAANEQCAVSAEINKNVNNIND 599