Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  198 bits (503), Expect = 7e-55
 Identities = 116/320 (36%), Positives = 188/320 (58%), Gaps = 6/320 (1%)

Query: 420 VLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRMSR---DNDLTVRLSEQGSDEIRQ 476
           +L+ +++ A++A+L + +    +S+ + + + QI+R+     D DLT +    G +E+  
Sbjct: 177 LLLGLILVAIVASLLSALF---MSRRLVNIVHQIKRVVEHLADGDLTQKTQISGQNELCA 233

Query: 477 LAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNE 536
           L   L+R++ HL+  I   A  ++ ++     +        +++      TD VVTA+ E
Sbjct: 234 LGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHALQTHAVETDQVVTAMTE 293

Query: 537 MSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHE 596
           MSA+   V+  A  AA F Q+AN++         + A  + ++  ++ +A   IA +N  
Sbjct: 294 MSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNEN 353

Query: 597 SQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEI 656
           ++ IA++LDVI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LAA+TQ ST EI
Sbjct: 354 TRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQASTAEI 413

Query: 657 RTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATAT 716
              ++RL+    S VN ++E   +      T    T+ L+ +   + ++N ++ QIATA 
Sbjct: 414 NQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDINGLSNQIATAA 473

Query: 717 EQQRGVTEEINANITSISDV 736
           E+Q  V+EEIN N+ +I ++
Sbjct: 474 EEQSAVSEEINRNLNTIREM 493



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 69/288 (23%), Positives = 107/288 (37%), Gaps = 47/288 (16%)

Query: 321 DASAFIGTLNSLTGDRAAINQIRSKQSAIGLLKVSSQAVDKALRGESGLMMESTHA--SV 378
           D    I  L  +  D A  ++  S Q  IG L V S A   AL+         THA  + 
Sbjct: 237 DLDRVIDHLRHMISDIAQASEHMSDQ--IGQLNVQSNANTHALQ---------THAVETD 285

Query: 379 QLLSAYTPLDALG------LRWALVTEMQADEALADIAKLSDELIMKVLIAIV--IGAVI 430
           Q+++A T + A           A     QA+E  AD +K + E     ++A+V  +    
Sbjct: 286 QVVTAMTEMSATAHNVAGDAASAARFTQQANEQ-ADKSKKAVEQAANTVVALVGKVDTAA 344

Query: 431 ATLAAWMVGNGISKPIRDSISQIQRMSRDNDLTV-----RLSEQG------SDEIRQLAQ 479
            T+A           I D I  I   +    L       R  EQG      +DE+R LA 
Sbjct: 345 HTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAA 404

Query: 480 A-------LNRMLSHLQDTICQFAHTTDKLNSHTQT-------ITHNMTGTRNSVSEQHE 525
                   +N+ML  L+       +  D+     Q        +T ++      V + + 
Sbjct: 405 RTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLTTYVFDING 464

Query: 526 RTDSVVTAVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELA 573
            ++ + TA  E SA   E++         V+E NQ G   ++    LA
Sbjct: 465 LSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLA 512



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 46/237 (19%), Positives = 89/237 (37%), Gaps = 31/237 (13%)

Query: 537 MSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELAR---DMTSINQQMASAVEAIARL 593
           MS  +  +    +R    + + +      +S  NEL     D+  +   +   +  IA+ 
Sbjct: 196 MSRRLVNIVHQIKRVVEHLADGDLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQA 255

Query: 594 N-HESQSIASVLDVIQAIAEQTNLLALNA-AIEAARAGEQGRGFAVVADEVRNLAAKTQT 651
           + H S  I  +      +    N  AL   A+E  +        +  A  V   AA    
Sbjct: 256 SEHMSDQIGQL-----NVQSNANTHALQTHAVETDQVVTAMTEMSATAHNVAGDAASAAR 310

Query: 652 STEEIRTKIDRLQKETQSVVNCIEEAN---NTVVRGVATCHSNTDMLKQIVDMLNELNEM 708
            T++   + D+ +K  +   N +       +T    +A  + NT  +  I+D++ ++ + 
Sbjct: 311 FTQQANEQADKSKKAVEQAANTVVALVGKVDTAAHTIAEMNENTRHIATILDVIGDIADQ 370

Query: 709 N--------IQIATATEQQRG---VTEEINANITSISDVSASVTVQVGEVNAIVNEL 754
                    I+ A A EQ RG   V +E+ A       ++A       E+N ++  L
Sbjct: 371 TNLLALNAAIEAARAGEQGRGFAVVADEVRA-------LAARTQASTAEINQMLERL 420