Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  234 bits (597), Expect = 1e-65
 Identities = 144/382 (37%), Positives = 218/382 (57%), Gaps = 20/382 (5%)

Query: 382 SAYTPLDALGLRWALVTEMQADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNG 441
           S+Y P     + W LV ++   E  A    L  +   ++LI  +I A    + A +V   
Sbjct: 257 SSYIP----SMDWYLVAQVPEAEVFA----LLTDAAYQILIWTLIIAAGFIMLAIVVAGS 308

Query: 442 ISKPIRDSISQIQRMSRD-----NDLTVRLSEQGSDEIRQLAQALNRMLSHLQDTICQFA 496
           +S+PI    +Q+  M RD      DL  RL  +G DEI QLAQ  N  +S +QD++ + A
Sbjct: 309 VSRPI----AQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVA 364

Query: 497 HTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAATFVQ 556
            T+++L    + +++    T     EQ +RT  VVTA+NEM A++ E++  A +AA   +
Sbjct: 365 QTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAK 424

Query: 557 EANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNL 616
           +A+ + + G  V       +  ++Q +    E I  L   ++SI  +LDVI+AI+EQTNL
Sbjct: 425 DADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNL 484

Query: 617 LALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEE 676
           LALNAAIEAARAGE GRGFAVVADEVRNLA++T  ST E++  ID+LQ E    VN + +
Sbjct: 485 LALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQ 544

Query: 677 ANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATEQQRGVTEEINANITSISDV 736
           +      GVA     +  L  I D +  +++MNIQ+A ATE+Q  V E+IN N+T I+++
Sbjct: 545 SRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEI 604

Query: 737 ---SASVTVQVGEVNAIVNELS 755
              +AS      + +  +N+L+
Sbjct: 605 TQRTASTAQAAAQASLALNQLA 626



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 49/260 (18%), Positives = 107/260 (41%), Gaps = 16/260 (6%)

Query: 401 QADEALADIAKLSDELIMKVLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRM--SR 458
           QA + L D  +  D  +M V     +GA +  +A+      ++    D+ S   ++  +R
Sbjct: 380 QAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTR 439

Query: 459 DNDLTVRLSEQGSDEIRQLAQALNRMLSHLQ------DTICQFAHTTD--KLNSHTQTIT 510
             D   +LS+    ++ Q+ + +  + +H +      D I   +  T+   LN+  +   
Sbjct: 440 ARDTINQLSQ----DVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAAR 495

Query: 511 HNMTGTRNSVSEQHERTDSVVTAV--NEMSASITEVSEFAQRAATFVQEANQKGHGGVSV 568
               G   +V     R  +  TA   NE+   I ++   A RA   + ++  + H GV+ 
Sbjct: 496 AGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQSRARSHEGVAA 555

Query: 569 GNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARA 628
            +E ++ +  I+ ++    +   ++   ++  ++V++ I     + N +    A  A  A
Sbjct: 556 VDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEITQRTASTAQAA 615

Query: 629 GEQGRGFAVVADEVRNLAAK 648
            +       +A  +  L AK
Sbjct: 616 AQASLALNQLAHRLDTLVAK 635