Pairwise Alignments

Query, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  268 bits (684), Expect = 9e-76
 Identities = 201/604 (33%), Positives = 309/604 (51%), Gaps = 53/604 (8%)

Query: 179 IKQYLEQFGLYDVFMVDNDGHVVYTVFKELDFATNLLSGPYKESGLARAYVQAKTLANNQ 238
           +K   +  G YD+F++ +DG V YTV KE D+ TNL +GPY+ SGLA+ + +A   ++  
Sbjct: 87  LKSLNKLLGFYDLFIISDDGSVFYTVAKEPDYGTNLRTGPYRTSGLAQLFDKASATSDT- 145

Query: 239 YYLDDFAPYYPSYEAAASFISTPIFNGSTRVGVLIFQMPVDEINSIMTFDSRWKENGLGN 298
            +L DF+ Y PS   AA+FI   I     R+ V+  Q+ ++ IN +M         G+G+
Sbjct: 146 VFLQDFSAYAPSNGQAAAFIGQSIQYHGQRI-VVAAQVSIERINRVMQI-----REGMGD 199

Query: 299 TGQSYLVGSDHLMRSQPRLLLED---ASAFIGTLNSLTGDRAAINQIRSKQSAIGLLKVS 355
           +G++YL+G D+ MRS   L  ++   +++F GT+                Q+ +  L   
Sbjct: 200 SGETYLIGPDNRMRSDSFLDPKNRTVSASFAGTI---------------AQNGVDTL--- 241

Query: 356 SQAVDKALRGESGLMMESTHASVQLLSAYTPLDALGLRWALVTEMQADEALADIAKLSDE 415
             AV  AL G+ G+M    +    +LSAY+P+  +GL+W L+ E+   E    IA  +  
Sbjct: 242 --AVKAALAGQEGVMQIYDYNHNLVLSAYSPVVEMGLKWGLMAEIDVSE----IAAPAYH 295

Query: 416 LIMKVLIAIVIGAVIATLAAWMVGNGISKPIR---DSISQIQRMSRDNDLTVRLSEQGSD 472
           ++   L+   +  V+A  AA +V + + KP+    + +  +  +    DLT  LS   +D
Sbjct: 296 MMYIGLVVCGLSIVLAIAAAKLVTSFVLKPLGGEPEDMCHLTSLIASGDLTHSLSHAHAD 355

Query: 473 EIRQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVT 532
               L   L RM + L++ I Q      +L S  +  +  M+   +S+  Q   TD + T
Sbjct: 356 N--HLMSWLARMQTKLKEIISQLVGMGHELESAAEQNSAAMSQADSSIQMQARETDMLAT 413

Query: 533 AVNEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAV---EA 589
           AV EMS +  E+S    +++  V    Q    G+ +   LA    S+   +AS     + 
Sbjct: 414 AVEEMSYAAAEISTNTMKSSDEVSSCTQSS--GI-LSQNLASTRQSLQVTLASFAAIHQQ 470

Query: 590 IARLNHESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKT 649
           +  L  +SQ I SVLDVI AIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA K 
Sbjct: 471 VGNLEADSQKIGSVLDVINAIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAVKV 530

Query: 650 QTSTEEIRTKIDRLQKET----QSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNEL 705
           Q +T++I   +  +Q+++    Q  V C  EA+ T         +  D+ K+    L+ L
Sbjct: 531 QEATQDIGKVLQGIQQQSGVLAQHSVTCSSEASKTAEDAEGMQAAVDDIAKR----LDTL 586

Query: 706 NEMNIQIATATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMELSKRM 765
             + IQ ATA E+Q  V+  I   I  +S  +   +  + +V A    L   A +L    
Sbjct: 587 KALMIQTATAAEEQTTVSATIAQGIAGLSAAAEENSAAISQVAASTRSLLGLANQLGLTT 646

Query: 766 GQFR 769
            QF+
Sbjct: 647 AQFK 650