Pairwise Alignments

Query, 307 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  188 bits (478), Expect = 1e-52
 Identities = 109/298 (36%), Positives = 171/298 (57%), Gaps = 4/298 (1%)

Query: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71
           +DR+  M++F  V    SFT+AAD L LS   VS++V ++E+ LK RLL+RTTRRV++T 
Sbjct: 3   LDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNVTE 62

Query: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131
           AG    +RC+Q+L    E++      S    G +++SAP+    + L  A+  F   HP 
Sbjct: 63  AGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQHPD 122

Query: 132 VHFDVLASDRFSQLVDERVDIALRFTQQPDENLIARRLLEVGMVVCATQEYLAQHAPIEL 191
           V  D+  +D+   L+++ VD+ALR  Q    +LIA++L  + +VVCA+ EYLA+    + 
Sbjct: 123 VRLDITLTDKKVDLLEDGVDVALRIGQLTSSSLIAKKLTPIKLVVCASPEYLAERGEPKT 182

Query: 192 PQDLTHHNCLVHISGNKWD--FVKNNEQFSVL-VNGNIRANDMGTLCRAALNHKGIIRLP 248
           P DL HHN L H S +     F +  E FS L +  ++  N+   L  AA+  +GI+  P
Sbjct: 183 PADLIHHNYL-HFSYSDLGAAFGRFGEHFSALKIPSDLACNNGDMLVEAAIAGRGIVVQP 241

Query: 249 CDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQEDLLW 306
             L +  LR+G+L+A+L DY      ++AVY+ R +    VR F+D L++ + +   W
Sbjct: 242 TFLVSKALRSGKLKAILTDYTPEPFGLYAVYVHRKFLASKVRCFVDALSQYYGKTPYW 299