Pairwise Alignments

Query, 307 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (404), Expect = 4e-44
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 3/288 (1%)

Query: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71
           M+  +A+  F+ V    SF+ A   L LS+  +S+ + ++E  L  +LL RTTR +SLT 
Sbjct: 1   MEHFSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTD 60

Query: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131
           AG    +     +  T E      E     RG++RIS P+   +  +   +  F   +P 
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 132 VHFDVLASDRFSQLVDERVDIALRFTQQPDENLIARRLLEVGMVVCATQEYLAQHAPIEL 191
           +   +   D+ + L+    D+A+R  + PD +LIAR++     V+CA+  YL QH     
Sbjct: 121 IQLQMQMDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPMT 180

Query: 192 PQDLTHHNCLVHI---SGNKWDFVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLP 248
           P +LT HNCL +     G +W F   +    V   GN + N+   + +A L+  GI  LP
Sbjct: 181 PCELTQHNCLFYSYFQDGVEWSFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANLP 240

Query: 249 CDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFL 296
             +  P L+ G LQALL DY LP   I+AVY  R YQ   V   I+FL
Sbjct: 241 RFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFL 288