Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., amino acid ABC transporter membrane protein 1, PAAT family from Pseudomonas syringae pv. syringae B728a

 Score =  121 bits (303), Expect = 2e-32
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 37/252 (14%)

Query: 40  IHYQWHWREAWTLIFTPRADGSLPYFLQGLGATLRLSLWGMVLALVLGSLIGIARSQKAW 99
           ++YQ ++   W            P  L GLG  L L+L  + +  V+G     A   +  
Sbjct: 1   MNYQLNFDAVWR---------DFPSLLAGLGLGLELALISIAIGCVIGLANAFALLSRYK 51

Query: 100 FVRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITWLFGP 159
            +R+ A+ +V +VRN P LV + + YF      +P LG+                     
Sbjct: 52  ALRIVASVYVTVVRNTPILVLILLIYF-----ALPGLGI--------------------- 85

Query: 160 ARLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQV 219
            RL + L S ++ + L + AY+ E+ RAGL +I +GQ EA  ++GL  W    Y+I P +
Sbjct: 86  -RL-DKLASFIVTLSLYAGAYLTEVFRAGLLSIHKGQREAGLAIGLGEWQVRAYIIVPVM 143

Query: 220 LTAITPALAGQTISLIKDTSIISLISIQELTFVGSEIANSSGLIFEIWLIVGAAYLVLCL 279
           L  + PAL+   ISL KDTS+ + I++ ELT+   +I   S  + E WL+  A Y+V C 
Sbjct: 144 LRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARKINVESYRVIETWLVTTALYVVACY 203

Query: 280 TLSMLFKQVEKR 291
            +++L + +E+R
Sbjct: 204 VIALLLRTLEQR 215