Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., polar amino acid ABC transporter, inner membrane subunit (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 3e-27
 Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 34/243 (13%)

Query: 53  IFTPRADGSLP---YFLQGLGATLRLSLWGMVLALVLGSLIGIARSQKAWFVRLPANAFV 109
           +FTP  +  L      L GL  TL ++L+ M+L  +LG    + +    W++R PAN +V
Sbjct: 9   LFTPIGEDGLIGIYLILNGLKVTLIVTLFAMILGAILGVATTLMKMSSRWYLRWPANLYV 68

Query: 110 QLVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITWLFGPARLWENLLSG 169
            ++R  P +V + I YF +                       L TW        + + + 
Sbjct: 69  GVIRGTPVVVQLVILYFIV-----------------------LATWDV------DKVSAA 99

Query: 170 VLCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAG 229
           ++  GL S AYI+EI+RAG+  + +GQ EAA SLGL      + VI PQ +  I PAL  
Sbjct: 100 IIAFGLNSGAYISEIIRAGIQAVDKGQTEAARSLGLSQAVTMKEVILPQAIKNILPALGN 159

Query: 230 QTISLIKDTSIISLISIQELTFVGSEIANSSGLIFEIWLIVGA-AYLVLCLTLSMLFKQV 288
           + I L+K+T++I  I   +L   G EI  S      + L   A  YL L  + + +  + 
Sbjct: 160 EFIVLLKETAVIGFIGGVDLMRSG-EIIRSRTFEDSVPLFTCALIYLALTYSFTFMLSKF 218

Query: 289 EKR 291
           EKR
Sbjct: 219 EKR 221