Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., polar amino acid ABC transporter, inner membrane subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  112 bits (279), Expect = 3e-29
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 33/275 (12%)

Query: 23  LAIASLIGWLYYRSEVGIHYQWH-----WREAWTLIFTPRADGSLPYFLQGLGATLRLSL 77
           L +A L G LY   +  + +QWH      R      F       +   L GL  +L +++
Sbjct: 339 LFVALLAGLLYSVGKGLLGFQWHVVFENLRSLLIWHFPTGRPDEMFLGLGGLAYSLLMAV 398

Query: 78  WGMVLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLG 137
             + ++  +G  +G+ RS      R+P   +++L+R  P ++ +F  YFFI         
Sbjct: 399 IAISVSFFIGLAVGVGRSSSNRVFRIPCLLYIELIRGNPLIIVIFWVYFFIP-------- 450

Query: 138 LDELLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQW 197
              ++   T  V    TW                 +   + AYIAEIVR G+ NIP GQ 
Sbjct: 451 ---VMFGTTLNVFWSATW----------------ALTAFTGAYIAEIVRTGIQNIPAGQV 491

Query: 198 EAADSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIISLISIQELTFVGSEIA 257
           EAA S GL      R ++ PQ L  + PA+ GQ I++ KDTS+  ++ + ELTFV   I 
Sbjct: 492 EAAYSTGLTYLQAMRRIVLPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQGIN 551

Query: 258 NSSGL-IFEIWLIVGAAYLVLCLTLSMLFKQVEKR 291
           N   +   EI+  V   Y + C ++S+   ++E+R
Sbjct: 552 NRLMIHPMEIYGTVAFLYFICCYSMSVFAARLERR 586



 Score = 97.4 bits (241), Expect = 7e-25
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 27/280 (9%)

Query: 15  TLLDGGLLLAIASLIGWLYYRSEVGIHYQWHWREAWTLIFTPRADGSLPY---FLQGLGA 71
           T +   +L+++A+    +YY    G  + + +   W+++FT      +      L+GL  
Sbjct: 9   TWVQNAVLISLATFA--IYY---CGWVFDFGYEFKWSMLFTRNETYGVVMGAEILKGLAN 63

Query: 72  TLRLSLWGMVLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVFIFYFFISNQ 131
           T+R+SL    LAL+LG+++G+AR      +R+ A   ++  RN P L+ +F +YF     
Sbjct: 64  TVRISLISSALALLLGTMLGLARLSLFRPLRVTATCVIEFFRNTPLLIQLFFWYF----- 118

Query: 132 LIPLLGLDELLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIAEIVRAGLAN 191
                    +L  +  E    I + F  A +          + + +++++AE++RAGL +
Sbjct: 119 -----AFPAILPDNAREALFSIQFEFWCATIG---------LSIYTASFMAEVIRAGLQS 164

Query: 192 IPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIISLISIQELTF 251
           IP+G  EAA S GL  +   R +I P    AI P L  + ++ +K++S+  ++ + ELT+
Sbjct: 165 IPKGLLEAAYSSGLSYFQVLRTIILPLAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTW 224

Query: 252 VGSEIANSSGLIFEIWLIVGAAYLVLCLTLSMLFKQVEKR 291
              ++ + +   FE        YL L L +S +   V  R
Sbjct: 225 HAQQVESLTFKGFEATSAATVLYLSLSLIISFILNGVNGR 264