Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  114 bits (286), Expect = 2e-30
 Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 34/259 (13%)

Query: 43  QWH--WREAWTLIFTPRADGSLPYFLQGLGATLRLSLWGMVLALVLGSLIGIARSQKAWF 100
           QW   W     L+     DG L     G+  ++ L++ G+  A  LG   G+ R  + W+
Sbjct: 2   QWDVVWNNMNYLLVGSYPDGPLG----GMAMSILLAIGGIFGAFWLGLAFGLMRLSEKWW 57

Query: 101 VRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITWLFGPA 160
           VR PA  +V+++R IP L+ +F FYF     L P+      L +   E            
Sbjct: 58  VRAPAIVYVEVIRGIPLLMLIFWFYF-----LAPIA-----LGHTLPEAE---------- 97

Query: 161 RLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQVL 220
                  S ++   + + AYIAEIVRAG+  +P GQ EAA   GL       +VI PQ L
Sbjct: 98  -------SALIAFIVFTGAYIAEIVRAGVLALPAGQMEAARGTGLSKTQAMLFVILPQAL 150

Query: 221 TAITPALAGQTISLIKDTSIISLISIQELTFVGSEIANSS-GLIFEIWLIVGAAYLVLCL 279
             + P+   Q +SL KDTS+  +I + ELT   +++ N +     EI+L +   Y V+C 
Sbjct: 151 RNMIPSFVNQFVSLTKDTSLAYIIGVSELTRTATQVNNRTLTAPTEIFLTIALMYFVICW 210

Query: 280 TLSMLFKQVEKRSLRHLSR 298
            L+   +++EK+  R+ +R
Sbjct: 211 VLTATSRRLEKQMARYQAR 229