Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  111 bits (277), Expect = 5e-29
 Identities = 84/284 (29%), Positives = 139/284 (48%), Gaps = 40/284 (14%)

Query: 16  LLDGGLLLAIASLIGWLYYRSEVGIHYQWHWR----EAWTLIFTPRADGSLPYFLQGLGA 71
           L  G  +LA+    G L + +  G+ Y ++W        TL+     +G       GLG 
Sbjct: 335 LCKGAFILAL----GGLLFVTARGL-YNFNWGVIADNLRTLLIWHFPNGQSDELFMGLGG 389

Query: 72  ---TLRLSLWGMVLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVFIFYFFI 128
              +L +++  + ++  +G ++GI R+      R+P   +++L+R  P ++ +F  YFFI
Sbjct: 390 LAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFFI 449

Query: 129 SNQLIPLLGLDELLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIAEIVRAG 188
                P+L       ++T                +    S  + + L + AY+AEIVRAG
Sbjct: 450 -----PVL-------FNT---------------FFNVFWSATIALTLFTGAYLAEIVRAG 482

Query: 189 LANIPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIISLISIQE 248
           + NIP GQ EAA S GL      R +I PQ L  + PA+ GQ I++ KDTS+  ++ + E
Sbjct: 483 IQNIPAGQVEAAYSTGLTFVQTMRRIILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLE 542

Query: 249 LTFVGSEIANSSGLI-FEIWLIVGAAYLVLCLTLSMLFKQVEKR 291
           LTFV   I N   +   EI+  V   Y + C ++S+   ++E+R
Sbjct: 543 LTFVAQGINNRLMVYPMEIYGTVAFLYFICCWSMSVYAARLERR 586



 Score =  104 bits (260), Expect = 4e-27
 Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 20/268 (7%)

Query: 21  LLLAIASLIGWLYYRSEVGIHYQWHWREAWTLIFTPRADGSLPYFLQGLGATLRLSLWGM 80
           L+L   +L+   Y+       YQ+ W   +T   T      L   L+GLG T+R+SL   
Sbjct: 14  LVLCSITLLAVYYWGWVFDFGYQFQWDILFTRNTTYGTHLGLE-ILKGLGVTVRISLISS 72

Query: 81  VLALVLGSLIGIARSQKAWFVRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLGLDE 140
            LAL LG+++GIAR      +RL A A V+  RN P LV +F F++F    ++P   + E
Sbjct: 73  ALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLF-FWYFAFPAILPE-NIRE 130

Query: 141 LLRYHTAEVHPLITWLFGPARLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQWEAA 200
           LL               G    W       + + + +SA++AE++RAGL +IP+G  EAA
Sbjct: 131 LL-------------FTGNFEFW----CATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAA 173

Query: 201 DSLGLPTWGKYRYVIAPQVLTAITPALAGQTISLIKDTSIISLISIQELTFVGSEIANSS 260
            S GL      R +I P    AI P L  + ++ +K++S+  ++ + ELT+   ++ + +
Sbjct: 174 YSSGLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLT 233

Query: 261 GLIFEIWLIVGAAYLVLCLTLSMLFKQV 288
              FE        YL L L +S +   V
Sbjct: 234 FKGFEATSAATVLYLSLSLLISFILNGV 261