Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  157 bits (397), Expect = 3e-43
 Identities = 96/256 (37%), Positives = 134/256 (52%), Gaps = 35/256 (13%)

Query: 42  YQWHWREAWTLIFTPRADG------SLPYFLQGLGATLRLSLWGMVLALVLGSLIGIARS 95
           Y W W  AW  +F    D       S    LQGLG TL+++   +VLAL+L ++    R 
Sbjct: 40  YVWQWYRAWRFLFVLPGDAGAEGGASAGLLLQGLGVTLQVAAGSLVLALLLAAVAVALRL 99

Query: 96  QKAWFVRLPANAFVQLVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITW 155
                 RL A  +V+ VRN P LV +F+ YF I+    P+ GL  +              
Sbjct: 100 SCLRTGRLVARLYVESVRNTPLLVQLFVTYFAIA----PVFGLGRMA------------- 142

Query: 156 LFGPARLWENLLSGVLCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVI 215
                       S V+ +G+   AY+AEI+RAG+A +PQGQWEA+ SLG+   G Y  VI
Sbjct: 143 ------------SAVMALGVFEGAYMAEILRAGIAAVPQGQWEASRSLGMDEPGTYVQVI 190

Query: 216 APQVLTAITPALAGQTISLIKDTSIISLISIQELTFVGSEIANSSGLIFEIWLIVGAAYL 275
            PQ L    P L GQ +SL+KD+S+ S I+I ELT     I   + L FE+WL+  A YL
Sbjct: 191 LPQALRRALPPLTGQAVSLVKDSSLASAIAIHELTMQAQTIIAETFLTFEVWLLTAAIYL 250

Query: 276 VLCLTLSMLFKQVEKR 291
            + L+LS + + +E+R
Sbjct: 251 CVTLSLSAVARLLERR 266