Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  127 bits (320), Expect = 2e-34
 Identities = 73/214 (34%), Positives = 115/214 (53%), Gaps = 16/214 (7%)

Query: 57  WAGDLLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQ 116
           W    + G  +TLQL G+S+I  L + +   + R SR L  RAL  GYI   R TPLLVQ
Sbjct: 9   WLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRGTPLLVQ 68

Query: 117 IYLLYF-----------VFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYE 165
           ++L+Y+              P +  D +  A++ + L   AY AE+ RG + ++P G+ E
Sbjct: 69  LFLVYYGMAQFDVVRQSALWPYLR-DPYWCAIITMTLHTAAYIAEIIRGAIQNVPHGEIE 127

Query: 166 AARSLGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVS 225
           AAR+LG+SR      +ILP+  +  LP  +NE++ ++K S++ S + + +LT   R I +
Sbjct: 128 AARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMARKIAA 187

Query: 226 ETAMPFEIWFSVAAIYLLLTLTL----SALSAWL 255
            T +  E++ +   IYLL+   L      L  WL
Sbjct: 188 RTYLHEEMFLTAGLIYLLIAFILMQGFKLLERWL 221