Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., polar amino acid ABC transporter, inner membrane subunit (RefSeq) from Shewanella loihica PV-4

 Score =  131 bits (330), Expect = 1e-35
 Identities = 77/210 (36%), Positives = 120/210 (57%)

Query: 50  IFEDGEWWAGDLLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVR 109
           I EDG      +L+GL VTL +T  ++I    LG+ T L++ S     R     Y+ V+R
Sbjct: 13  IGEDGLIGIYLILNGLKVTLIVTLFAMILGAILGVATTLMKMSSRWYLRWPANLYVGVIR 72

Query: 110 NTPLLVQIYLLYFVFGPVIGLDRFATAVLALALFQGAYTAEVFRGGLNSIPQGQYEAARS 169
            TP++VQ+ +LYF+      +D+ + A++A  L  GAY +E+ R G+ ++ +GQ EAARS
Sbjct: 73  GTPVVVQLVILYFIVLATWDVDKVSAAIIAFGLNSGAYISEIIRAGIQAVDKGQTEAARS 132

Query: 170 LGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETAM 229
           LGLS+  T  +VILPQ ++  LP L NE + L+K ++++  +   DL   G  I S T  
Sbjct: 133 LGLSQAVTMKEVILPQAIKNILPALGNEFIVLLKETAVIGFIGGVDLMRSGEIIRSRTFE 192

Query: 230 PFEIWFSVAAIYLLLTLTLSALSAWLEHKL 259
                F+ A IYL LT + + + +  E +L
Sbjct: 193 DSVPLFTCALIYLALTYSFTFMLSKFEKRL 222