Pairwise Alignments

Query, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  162 bits (409), Expect = 1e-44
 Identities = 88/210 (41%), Positives = 132/210 (62%), Gaps = 10/210 (4%)

Query: 59  GDLLHGLLVTLQLTGISLIFTLALGLTTALLRQSRSLVGRALGTGYIAVVRNTPLLVQIY 118
           G LL GL +TL+++ +++I  + LG+ T L R S +   R L   YI ++R +PLLVQ++
Sbjct: 125 GILLEGLWITLEVSMLAIIIGIVLGVVTGLARISVNPALRWLAITYIEIIRGSPLLVQVF 184

Query: 119 LLYFVFGPV-------IGLDRFAT---AVLALALFQGAYTAEVFRGGLNSIPQGQYEAAR 168
           L YFV G +       +GL         V+ALA+F GAY AE+ R G+ S+ +GQ EAAR
Sbjct: 185 LWYFVVGTLLNALFEKVGLSAIPPLWYGVMALAIFTGAYVAEIVRAGIQSVHRGQMEAAR 244

Query: 169 SLGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIFDLTTQGRNIVSETA 228
           SLG+S   +   VILPQ  +R +PPL  + +SL+K+SS++ V+A+ +LT   R +V+ + 
Sbjct: 245 SLGMSYAQSMRKVILPQAFRRIMPPLAGQFISLVKDSSLLGVIAVRELTKATREVVTTSL 304

Query: 229 MPFEIWFSVAAIYLLLTLTLSALSAWLEHK 258
            PFE+W   A +YL+LT TLS    +LE +
Sbjct: 305 QPFELWIVCALLYLVLTFTLSLCVQYLERR 334



 Score = 30.8 bits (68), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 17 MMLVFAGLVWLLDSGAEAMGYTWQWHRVPEYVLIFE 52
          +ML      W   S  E   Y W+W+RVP+Y  + E
Sbjct: 26 IMLCTVAFFWYASSSVE---YIWRWNRVPQYFWVAE 58