Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  205 bits (522), Expect = 4e-57
 Identities = 123/394 (31%), Positives = 216/394 (54%), Gaps = 5/394 (1%)

Query: 267 NQQVDASLASSLAKLDDMAKYAGSIAQQSRMLADAAVSSANFWIMAVSAISAAVALVIGY 326
           ++++  ++  S+ KL D+   A      + +    AV      I+ +      + L +  
Sbjct: 153 SERLFETMRDSIDKLGDLEDAASHREGDAAIENGEAVGVQQGAILLIGLFCCVLVLTV-- 210

Query: 327 TTARSIQKPLQKINHELAYMARG--DMTRRINYPTRCEFGALSRSIDILADKTGELLSQI 384
                +  P++++ H +  +A G  D+  R+   +  E G L  + +   DK   L++++
Sbjct: 211 -LPLVVLSPMRRLLHRVEQIAEGGGDLKGRLEVRSADELGQLGGAFNRFLDKLQPLIAEV 269

Query: 385 NAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSATEVARSTDGAKDEV 444
              +  + + A   A+++      +  + +  DQV+ A T++  +  EVA +   A D  
Sbjct: 270 GRVTGEVDSAARAMADMAATNDRLISSEHAALDQVSTAATQMSAAVHEVAHNAVSASDAA 329

Query: 445 DRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIGSILDVIRGIAEQTN 504
            +A ++++ G + V++T     QLA ++ESA G    L + +++IG++L+VIRGIAEQTN
Sbjct: 330 QQASSQSRDGAEVVSSTIESIRQLAQEVESASGTIEALAQETSSIGAVLEVIRGIAEQTN 389

Query: 505 LLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIENLQESSKQVVEVMG 564
           LLALNAAIEAARAG+ GRGFAVVADEVRALA RTQ ST++IQ  IE LQ    + V+ M 
Sbjct: 390 LLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTKDIQVRIERLQSGVAKAVQAMQ 449

Query: 565 RSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIVVSQSVAHHVTGIAE 624
               + R  VE+   +D  L   +  +  I +MA Q+A+A +EQ  V++ +A +++ I +
Sbjct: 450 VGSSKARDSVERAAGVDEVLSGTSGSIQRINDMAAQIANACEEQSSVTEEIARNISDIRD 509

Query: 625 VAHETEREARESASSSEVLADLAAKQQQLIAHFK 658
           +++E    + +S  +S+ L+ L+    +L   F+
Sbjct: 510 LSNEAASNSAQSMQASQQLSSLSRNLAELTGRFR 543



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 67  LEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDVLQATNQFYSQA 126
           LE R+++E G+L    N+F D   + + L  ++  +T   +S  +    + ATN      
Sbjct: 240 LEVRSADELGQLGGAFNRFLD---KLQPLIAEVGRVTGEVDSAARAMADMAATND----- 291

Query: 127 DQVLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAELITSGI 185
             + ++H+          ++  A   +      A+D   Q SS     R+ AE+++S I
Sbjct: 292 RLISSEHAALDQVSTAATQMSAAVHEVAHNAVSASDAAQQASS---QSRDGAEVVSSTI 347