Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  202 bits (514), Expect = 3e-56
 Identities = 130/354 (36%), Positives = 208/354 (58%), Gaps = 12/354 (3%)

Query: 311 MAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARG--DMTRRINYPTRCEFGALSR 368
           + +SAI A +  ++     RSI +PL+     +A +A G  D+TR ++     E   L R
Sbjct: 198 LLISAIMAVLVAIL----IRSIVRPLRHTMAAMANIASGEADLTRTLDVSGNDELTTLGR 253

Query: 369 SIDILADKTGELLSQI--NAGSRHLVNEASRS-AEISERAMARVQEQKSQTDQVAAAITE 425
             +    K   ++ Q+   AG+   ++++SRS +++S +A  + Q+Q  Q +QVA AI E
Sbjct: 254 DFNRFTQKLRTVVGQLFETAGA---LDQSSRSLSQLSGQAHEQSQQQMLQMEQVATAINE 310

Query: 426 LEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEF 485
           +  +  EVA++ + A  EV  A+ +A QG++ + T+ +  ++L++ +  AV +   L + 
Sbjct: 311 VTYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQAVDVIQSLADE 370

Query: 486 SNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEI 545
           +  IGS+L+VI  IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA RTQ ST EI
Sbjct: 371 TTKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQQSTAEI 430

Query: 546 QHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAA 605
             MIE LQ++S   V V+  S   ++  VEQ  +   +L  IA  +  +  +   +A A 
Sbjct: 431 HGMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGESLGEIAQALRNLSGLNASIASAT 490

Query: 606 QEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
            +Q  V + +  +VT  A +A E+   A +S+ + + L +LA +  +L++ F+V
Sbjct: 491 LQQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLNRLLSQFRV 544



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 245 GQNGLLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLA-DAAV 303
           GQ  +  ++++  +L +A + Q   V  SLA    K+  + +  GSIA+Q+ +LA +AA+
Sbjct: 339 GQRNIETSLQQIDEL-SATIGQAVDVIQSLADETTKIGSVLEVIGSIAEQTNLLALNAAI 397

Query: 304 SSA 306
            +A
Sbjct: 398 EAA 400