Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  215 bits (547), Expect = 5e-60
 Identities = 131/347 (37%), Positives = 192/347 (55%)

Query: 311 MAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFGALSRSI 370
           +A++  +AA A +     A     PLQ++  +   +    + + I    R E+G ++ ++
Sbjct: 176 VAIALATAAAAALGAGGLAYLALAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAM 235

Query: 371 DILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAITELEVSA 430
            +L  + G ++ +I   SR L   A       + +      Q+S+TDQVA AI ++  S 
Sbjct: 236 KMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASV 295

Query: 431 TEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFSNNIG 490
            EVA +     +   RAD+E   G + V  T     QLA D++ A  + H+L   SN+I 
Sbjct: 296 QEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDIT 355

Query: 491 SILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEEIQHMIE 550
            +LDVIRGIAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+RTQ ST+EI  MI 
Sbjct: 356 KVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIG 415

Query: 551 NLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHAAQEQIV 610
            LQ  ++Q VEVM RS+EQ    VE   +   +L  I  R+  I EM+ Q+A A ++Q  
Sbjct: 416 ALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSA 475

Query: 611 VSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHF 657
           VS+++  ++  I   +         S  S+  +A+LA   + L+  F
Sbjct: 476 VSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522