Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  222 bits (566), Expect = 3e-62
 Identities = 186/655 (28%), Positives = 299/655 (45%), Gaps = 45/655 (6%)

Query: 12  GFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGLKEALQESNRWVLEFRT 71
           GF L+++L +L+ +     I  +++    +SD      +        L  S  +  E R 
Sbjct: 3   GFALVIVLTVLIALTGWTGITSLSERSERISDIGKLSALTRDVRIARLAYSVNYDAE-RA 61

Query: 72  SEEAGELPQLSNKFKDQQARFRQLSQQ--MNALTDSTESQK-QFQDVLQATNQFYSQADQ 128
           S     L  L N  K  Q  F        +N   D+ +  +  + +++QAT    +  + 
Sbjct: 62  SNWLKALEGLENHVKYAQKVFDSPLNVPLVNTAADALKDYRIHYDNLMQAT----AAREA 117

Query: 129 VLTQHSEWVNALAQRRKLEIAFIRLEDTYQWAADLLLQQSSGQRSMRNKAELITSGIARD 188
             +   ++ +A A   +   A  R +D      D ++Q  +  + MR        G    
Sbjct: 118 TRSVFGQYADAGADDLQKLNAVARSDDGTPAQRDAIVQAMTLFQKMRFDLR----GYTYS 173

Query: 189 LKNIRRADAKTDLNELEKVLSKDIEMARKRLDRVLVPDDVKARYIANLNRLQELALGQNG 248
           LK   RA A+T +N +                           ++ NL      +     
Sbjct: 174 LKAENRAPAETSMNTV-------------------------IEFVRNLQGFDGQSAIIKH 208

Query: 249 LLATMRKAQQLENALLIQNQQVDASLASSLAKLDDMAKYAGSIAQQSRMLADAAVSSANF 308
           L+ +M   Q   N       ++D + A     +  + + A  +++    L    VS A  
Sbjct: 209 LVDSMISYQNTLNQFTAAQARIDLAQAGITKDIGILFECADKLSENQVNLRVEDVSQAKM 268

Query: 309 ----WIMAVSAISAAVALVIGYTTARSIQKPLQKINHELAYMARGDMTRRINYPTRCEFG 364
               W++A   +SA  A VI       I  PL+        +A GD+T       + E G
Sbjct: 269 LLSVWLIAALIMSALAAWVI----TNLIVGPLRDTLKLAERVADGDLTHNQVVTRKDELG 324

Query: 365 ALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQKSQTDQVAAAIT 424
            L  S+  +     EL+  +  G   + + A + + ++E+  A V  QK++TDQVA A+ 
Sbjct: 325 QLQGSMMRMTGNLRELIGGLRDGVTQIASAAEQLSAVTEQTSAGVNSQKNETDQVATAMH 384

Query: 425 ELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDMESAVGITHKLGE 484
           E+  +  EVAR+ + A      A  EA++G   V+      E+LA+++  +      L  
Sbjct: 385 EMSATVQEVARNAEQASHAAVNASKEAREGDGVVSKAVAQIEKLATEVTHSKSAMDDLKN 444

Query: 485 FSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALATRTQTSTEE 544
            SN IG +LDVI+ +AEQTNLLALNAAIEAARAG+AGRGFAVVADEVR+LA RTQTSTEE
Sbjct: 445 ESNKIGGVLDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQTSTEE 504

Query: 545 IQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGAIKEMADQVAHA 604
           I  +I  L   + QV  ++  SQ  T   VE TR    ++ ++   +  I+ M  Q+A A
Sbjct: 505 IAALISGLHTRTAQVATILDNSQALTANSVELTRNAGVSINNMTQAISTIETMNHQIAAA 564

Query: 605 AQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQLIAHFKV 659
           A+EQ  V++ +   V  + +++ +T   + E+A+SS  LA L    Q L++ F+V
Sbjct: 565 AEEQSAVAEEINRSVLNVRDISEQTASASEETAASSVELARLGVHLQSLVSRFRV 619